All Classes
AbstractMendelianChecker
AllAnnotationListTextGenerator
AltGeneIDType
AminoAcidChange
AminoAcidChangeNormalizer
Annotation
AnnotationBuilderDispatcher
AnnotationBuilderOptions
AnnotationException
AnnotationLocation
AnnotationLocation.RankType
AnnotationLocationBuilder
AnnotationMessage
BestAnnotationListTextGenerator
BlockSubstitutionAnnotationBuilder
CDSInterval
CDSPosition
Chromosome
ChromosomeType
DataSource
DataSourceFactory
DatasourceOptions
DeletionAnnotationBuilder
Disease
DNAUtils
DuplicationChecker
EnsemblParser
FASTAParser
FASTARecord
FeatureRecord
FeatureRecord.Strand
FeatureRecordParser
FileDownloadException
FlatBEDDataSource
FlatBEDFastaParser
FlatBEDJannovarDataFactory
FlatBEDParser
GenomeInterval
GenomePosition
GenomeVariant
GenomeVariantNormalizer
GenomeVariantType
GenomicNucleotideChangeBuilder
Genotype
Genotype
GenotypeBuilder
GenotypeCalls
GenotypeCallsBuilder
GenotypeList
GenotypeListBuilder
GFFParser
GFFParser.GFFVersion
GFFRecordParser
GTFRecordParser
HG19RefDictBuilder
HGNCParser
HGNCRecord
Immutable
IncompatiblePedigreeException
InsertionAnnotationBuilder
Interval
IntervalArray
IntervalEndExtractor
InvalidAttributeException
InvalidCodonException
InvalidCoordinateException
InvalidDataSourceException
InvalidGenomeVariant
JannovarData
JannovarDataFactory
JannovarDataSerializer
JannovarException
MendelianCheckerAD
MendelianCheckerAR
MendelianCheckerARCompoundHet
MendelianCheckerARHom
MendelianCheckerXD
MendelianCheckerXR
MendelianCheckerXRCompoundHet
MendelianCheckerXRHom
MendelianInheritanceChecker
ModeOfInheritance
MutableInterval
NucleotidePointLocationBuilder
OldVariantType
PathUtil
PedFileContents
PedFileReader
PedFileWriter
Pedigree
Pedigree.IndexedPerson
PedigreeExtractor
PedigreeQueryDecorator
PedParseException
PedPerson
Person
PositionType
ProgressBar
ProjectionException
PutativeImpact
ReferenceDictionary
ReferenceDictionaryBuilder
ReferenceDictParser
RefSeqParser
SerializationException
Sex
SNVAnnotationBuilder
Strand
StringUtil
StructuralVariantAnnotationBuilder
TranscriptInterval
TranscriptIntervalEndExtractor
TranscriptModel
TranscriptModelBuilder
TranscriptModelBuilderHGNCExtender
TranscriptParseException
TranscriptParser
TranscriptPosition
TranscriptProjectionDecorator
TranscriptSequenceChangeHelper
TranscriptSequenceDecorator
TranscriptSequenceOntologyDecorator
TranscriptSupportLevels
TranscriptSupportLevelsSetterFromLengths
Translator
UCSCParser
UncheckedJannovarException
VariantAnnotations
VariantAnnotationsContentDecorator
VariantAnnotationsTextGenerator
VariantAnnotator
VariantDescription
VariantEffect