Package de.charite.compbio.jannovar.annotation.builders

Class Summary

Class	Description
AnnotationBuilderDispatcher	Dispatches annotation building to the specific classes, depending on their GenomeVariant.getType().
AnnotationBuilderOptions	Configuration for the AnnotationBuilder subclasses.
BlockSubstitutionAnnotationBuilder	Builds Annotation objects for the block substitution GenomeVariant in the given TranscriptModel .
DeletionAnnotationBuilder	Builds Annotation objects for the deletion GenomeVariants in the given TranscriptModel.
GenomicNucleotideChangeBuilder	Build NucleotideChange for a GenomeVariant.
InsertionAnnotationBuilder	Builds Annotation objects for the insertion GenomeVariant in the given TranscriptModel
SNVAnnotationBuilder	Builds Annotation objects for the SNV GenomeVariants in the given TranscriptModel
StructuralVariantAnnotationBuilder	Class providing static functions for creating Annotation objects for SVs.
SVAnnotationBuilderDispatcher	Dispatches annotation building for SVs to the specific classes, depending on their SVDescription.getType().
SVBreakendAnnotationBuilder	Build annotation for SVBreakend.
SVCopyNumberVariantAnnotationBuilder	Build annotation for SVCopyNumberVariant.
SVDeletionAnnotationBuilder	Build annotation for SVDeletion.
SVDuplicationAnnotationBuilder	Build annotation for SVDuplication.
SVInsertionAnnotationBuilder	Build annotation for SVInsertion.
SVInversionAnnotationBuilder	Build annotation for SVInversion.
SVMobileElementDeletionAnnotationBuilder	Build annotation for SVMobileElementDeletion.
SVMobileElementInsertionAnnotationBuilder	Build annotation for SVMobileElementDeletion.
SVTandemDuplicationAnnotationBuilder	Build annotation for SVTandemDuplication.