Fasta2ADAM
cli
Fasta2ADAMArgs
cli
FlagStat
cli
FlagStatArgs
cli
fastaFile
Fasta2ADAMArgs
fastqRecordGroup
TransformAlignmentsArgs
featuresFile
TransformFeaturesArgs
filesToPrint
PrintADAMArgs
forceLoadBam
TransformAlignmentsArgs
forceLoadFastq
TransformAlignmentsArgs
forceLoadIFastq
TransformAlignmentsArgs
forceLoadParquet
TransformAlignmentsArgs
forceNonParquet
TransformAlignments
forceShuffle
ADAM2FastaArgs
TransformAlignmentsArgs
TransformGenotypesArgs
TransformVariantsArgs