htsjdk.samtools
org.broadinstitute.hellbender
org.broadinstitute.hellbender.cmdline
org.broadinstitute.hellbender.cmdline.argumentcollections
org.broadinstitute.hellbender.cmdline.programgroups
org.broadinstitute.hellbender.engine
org.broadinstitute.hellbender.engine.datasources
org.broadinstitute.hellbender.engine.filters
org.broadinstitute.hellbender.engine.spark
org.broadinstitute.hellbender.engine.spark.datasources
org.broadinstitute.hellbender.exceptions
org.broadinstitute.hellbender.metrics
org.broadinstitute.hellbender.tools
org.broadinstitute.hellbender.tools.examples
org.broadinstitute.hellbender.tools.exome
org.broadinstitute.hellbender.tools.picard.analysis
org.broadinstitute.hellbender.tools.picard.analysis.artifacts
org.broadinstitute.hellbender.tools.picard.analysis.directed
org.broadinstitute.hellbender.tools.picard.fastq
org.broadinstitute.hellbender.tools.picard.interval
org.broadinstitute.hellbender.tools.picard.sam
org.broadinstitute.hellbender.tools.picard.sam.markduplicates
org.broadinstitute.hellbender.tools.picard.vcf
org.broadinstitute.hellbender.tools.picard.vcf.concordance
org.broadinstitute.hellbender.tools.picard.vcf.filter
org.broadinstitute.hellbender.tools.readersplitters
org.broadinstitute.hellbender.tools.spark
org.broadinstitute.hellbender.tools.spark.pipelines
org.broadinstitute.hellbender.tools.spark.pipelines.metrics
org.broadinstitute.hellbender.tools.spark.sv
org.broadinstitute.hellbender.tools.spark.transforms
org.broadinstitute.hellbender.tools.spark.transforms.bqsr
org.broadinstitute.hellbender.tools.spark.transforms.markduplicates
org.broadinstitute.hellbender.tools.spark.utils
org.broadinstitute.hellbender.tools.spark.validation
org.broadinstitute.hellbender.tools.validation
org.broadinstitute.hellbender.tools.walkers
org.broadinstitute.hellbender.tools.walkers.annotator
org.broadinstitute.hellbender.tools.walkers.bqsr
org.broadinstitute.hellbender.tools.walkers.filters
org.broadinstitute.hellbender.tools.walkers.genotyper
org.broadinstitute.hellbender.tools.walkers.genotyper.afcalc
org.broadinstitute.hellbender.tools.walkers.rnaseq
org.broadinstitute.hellbender.tools.walkers.variantutils
org.broadinstitute.hellbender.transformers
org.broadinstitute.hellbender.utils
org.broadinstitute.hellbender.utils.R
org.broadinstitute.hellbender.utils.activityprofile
org.broadinstitute.hellbender.utils.baq
org.broadinstitute.hellbender.utils.clipping
org.broadinstitute.hellbender.utils.codecs
org.broadinstitute.hellbender.utils.codecs.table
org.broadinstitute.hellbender.utils.collections
org.broadinstitute.hellbender.utils.commandline
org.broadinstitute.hellbender.utils.downsampling
org.broadinstitute.hellbender.utils.fasta
org.broadinstitute.hellbender.utils.fragments
org.broadinstitute.hellbender.utils.gcs
org.broadinstitute.hellbender.utils.gene
org.broadinstitute.hellbender.utils.genotyper
org.broadinstitute.hellbender.utils.haplotype
org.broadinstitute.hellbender.utils.help
org.broadinstitute.hellbender.utils.illumina
org.broadinstitute.hellbender.utils.io
org.broadinstitute.hellbender.utils.iterators
org.broadinstitute.hellbender.utils.locusiterator
org.broadinstitute.hellbender.utils.logging
org.broadinstitute.hellbender.utils.pairhmm
org.broadinstitute.hellbender.utils.pileup
org.broadinstitute.hellbender.utils.read
org.broadinstitute.hellbender.utils.read.markduplicates
org.broadinstitute.hellbender.utils.read.mergealignment
org.broadinstitute.hellbender.utils.recalibration
org.broadinstitute.hellbender.utils.recalibration.covariates
org.broadinstitute.hellbender.utils.reference
org.broadinstitute.hellbender.utils.report
org.broadinstitute.hellbender.utils.runtime
org.broadinstitute.hellbender.utils.samples
org.broadinstitute.hellbender.utils.smithwaterman
org.broadinstitute.hellbender.utils.test
org.broadinstitute.hellbender.utils.test.testers
org.broadinstitute.hellbender.utils.text
org.broadinstitute.hellbender.utils.text.parsers
org.broadinstitute.hellbender.utils.variant
org.broadinstitute.hellbender.utils.variant.writers