ca
.
innovativemedicine
.
vcf
.
annovar
AnnovarPatch
object
AnnovarPatch
extends
Serializable
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AnnovarPatch
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Type Members
type
AnnovarRow
= (
VariantID
,
List
[(
Info
,
List
[
VcfValue
])])
case class
Descriptor
(
vcfStartCol:
Int
,
extraInfoCol:
Map
[
Info
,
Int
]
)
extends
Product
with
Serializable
type
Input
=
BufferedIterator
[(
VariantID
,
List
[(
Info
,
List
[
VcfValue
])])]
Value Members
final
def
!=
(
arg0:
AnyRef
)
:
Boolean
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final
def
!=
(
arg0:
Any
)
:
Boolean
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final
def
##
()
:
Int
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final
def
==
(
arg0:
AnyRef
)
:
Boolean
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final
def
==
(
arg0:
Any
)
:
Boolean
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final
def
asInstanceOf
[
T0
]
:
T0
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def
clone
()
:
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protected[
java.lang
]
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@throws
(
...
)
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
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def
equals
(
arg0:
Any
)
:
Boolean
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def
finalize
()
:
Unit
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protected[
java.lang
]
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@throws
(
classOf[java.lang.Throwable]
)
final
def
getClass
()
:
Class
[_]
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def
hashCode
()
:
Int
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final
def
isInstanceOf
[
T0
]
:
Boolean
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final
def
ne
(
arg0:
AnyRef
)
:
Boolean
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final
def
notify
()
:
Unit
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final
def
notifyAll
()
:
Unit
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def
parsePatch
(
file:
File
)
:
Either
[
String
,
Descriptor
]
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
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def
toString
()
:
String
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final
def
wait
()
:
Unit
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@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
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@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
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@throws
(
...
)
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