ca.innovativemedicine.vcf.annovar

AnnovarPatchParsers

trait AnnovarPatchParsers extends MetadataParsers

Linear Supertypes
MetadataParsers, TsvParsers, JavaTokenParsers, RegexParsers, Parsers, AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. AnnovarPatchParsers
  2. MetadataParsers
  3. TsvParsers
  4. JavaTokenParsers
  5. RegexParsers
  6. Parsers
  7. AnyRef
  8. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Type Members

  1. final class ArgListBuilder extends AnyRef

    Attributes
    protected
    Definition Classes
    MetadataParsers

  2. type Elem = Char

    Definition Classes
    RegexParsers → Parsers

  3. case class Error extends NoSuccess with Product with Serializable

    Definition Classes
    Parsers

  4. case class Failure extends NoSuccess with Product with Serializable

    Definition Classes
    Parsers

  5. final class FieldOps[A] extends AnyRef

    Definition Classes
    TsvParsers

  6. type Input = Reader[Elem]

    Definition Classes
    Parsers

  7. sealed abstract class NoSuccess extends ParseResult[Nothing]

    Definition Classes
    Parsers

  8. trait OnceParser[+T] extends Parser[T]

    Definition Classes
    Parsers

  9. sealed abstract class ParseResult[+T] extends AnyRef

    Definition Classes
    Parsers

  10. abstract class Parser[+T] extends (Input) ⇒ ParseResult[T]

    Definition Classes
    Parsers

  11. case class Success[+T] extends ParseResult[T] with Product with Serializable

    Definition Classes
    Parsers

  12. case class ~[+a, +b] extends Product with Serializable

    Definition Classes
    Parsers

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. implicit def FieldOps[A](a: Parser[A]): FieldOps[A]

    Definition Classes
    TsvParsers

  7. def OnceParser[T](f: (Input) ⇒ ParseResult[T]): Parser[T] with OnceParser[T]

    Definition Classes
    Parsers

  8. def Parser[T](f: (Input) ⇒ ParseResult[T]): Parser[T]

    Definition Classes
    Parsers

  9. def accept[U](expected: String, f: PartialFunction[Elem, U]): Parser[U]

    Definition Classes
    Parsers

  10. def accept[ES](es: ES)(implicit arg0: (ES) ⇒ List[Elem]): Parser[List[Elem]]

    Definition Classes
    Parsers

  11. implicit def accept(e: Elem): Parser[Elem]

    Definition Classes
    Parsers

  12. def acceptIf(p: (Elem) ⇒ Boolean)(err: (Elem) ⇒ String): Parser[Elem]

    Definition Classes
    Parsers

  13. def acceptMatch[U](expected: String, f: PartialFunction[Elem, U]): Parser[U]

    Definition Classes
    Parsers

  14. def acceptSeq[ES](es: ES)(implicit arg0: (ES) ⇒ Iterable[Elem]): Parser[List[Elem]]

    Definition Classes
    Parsers

  15. val allFields: Parser[List[String]]

    Definition Classes
    TsvParsers

  16. def alt: Parser[Alt]

    Definition Classes
    MetadataParsers

  17. def arity: Parser[Product with Serializable with Arity]

    Definition Classes
    MetadataParsers

  18. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  19. def chainl1[T, U](first: ⇒ Parser[T], p: ⇒ Parser[U], q: ⇒ Parser[(T, U) ⇒ T]): Parser[T]

    Definition Classes
    Parsers

  20. def chainl1[T](p: ⇒ Parser[T], q: ⇒ Parser[(T, T) ⇒ T]): Parser[T]

    Definition Classes
    Parsers

  21. def chainr1[T, U](p: ⇒ Parser[T], q: ⇒ Parser[(T, U) ⇒ U], combine: (T, U) ⇒ U, first: U): Parser[U]

    Definition Classes
    Parsers

  22. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  23. def columnMap: Parser[(String, String, Int)]

  24. def commit[T](p: ⇒ Parser[T]): Parser[T]

    Definition Classes
    Parsers

  25. def decimalNumber: Parser[String]

    Definition Classes
    JavaTokenParsers

  26. def description: Parser[String]

    Definition Classes
    MetadataParsers

  27. def elem(e: Elem): Parser[Elem]

    Definition Classes
    Parsers

  28. def elem(kind: String, p: (Elem) ⇒ Boolean): Parser[Elem]

    Definition Classes
    Parsers

  29. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  30. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  31. def err(msg: String): Parser[Nothing]

    Definition Classes
    Parsers

  32. def failure(msg: String): Parser[Nothing]

    Definition Classes
    Parsers

  33. val field: Parser[String]

    Attributes
    protected
    Definition Classes
    TsvParsers

  34. def filter: Parser[Filter]

    Definition Classes
    MetadataParsers

  35. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  36. def floatingPointNumber: Parser[String]

    Definition Classes
    JavaTokenParsers

  37. def format: Parser[Format]

    Definition Classes
    MetadataParsers

  38. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  39. def guard[T](p: ⇒ Parser[T]): Parser[T]

    Definition Classes
    Parsers

  40. def handleWhiteSpace(source: CharSequence, offset: Int): Int

    Attributes
    protected
    Definition Classes
    RegexParsers

  41. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  42. def header: Parser[Either[List[Sample], Metadata]]

    Definition Classes
    MetadataParsers

  43. def id: Parser[VcfId]

    Definition Classes
    MetadataParsers

  44. def ident: Parser[String]

    Definition Classes
    JavaTokenParsers

  45. def info: Parser[Info]

    Definition Classes
    MetadataParsers

  46. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  47. implicit def literal(s: String): Parser[String]

    Definition Classes
    RegexParsers

  48. def log[T](p: ⇒ Parser[T])(name: String): Parser[T]

    Definition Classes
    Parsers

  49. def meta[A](name: String)(f: (ArgListBuilder) ⇒ Parser[A]): Parser[A]

    Definition Classes
    MetadataParsers

  50. def metadata: Parser[Metadata]

    Definition Classes
    MetadataParsers

  51. def mkList[T]: (~[T, List[T]]) ⇒ List[T]

    Definition Classes
    Parsers

  52. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  53. val newline: Parser[String]

  54. def not[T](p: ⇒ Parser[T]): Parser[Unit]

    Definition Classes
    Parsers

  55. final def notify(): Unit

    Definition Classes
    AnyRef

  56. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  57. def numProp(p: String): Parser[String]

    Definition Classes
    MetadataParsers

  58. def opt[T](p: ⇒ Parser[T]): Parser[Option[T]]

    Definition Classes
    Parsers

  59. def parse[T](p: Parser[T], in: Reader): ParseResult[T]

    Definition Classes
    RegexParsers

  60. def parse[T](p: Parser[T], in: CharSequence): ParseResult[T]

    Definition Classes
    RegexParsers

  61. def parse[T](p: Parser[T], in: Reader[Char]): ParseResult[T]

    Definition Classes
    RegexParsers

  62. def parseAll[T](p: Parser[T], in: CharSequence): ParseResult[T]

    Definition Classes
    RegexParsers

  63. def parseAll[T](p: Parser[T], in: Reader): ParseResult[T]

    Definition Classes
    RegexParsers

  64. def parseAll[T](p: Parser[T], in: Reader[Char]): ParseResult[T]

    Definition Classes
    RegexParsers

  65. def patch: Parser[Descriptor]

  66. def phrase[T](p: Parser[T]): Parser[T]

    Definition Classes
    RegexParsers → Parsers

  67. def positioned[T <: Positional](p: ⇒ Parser[T]): Parser[T]

    Definition Classes
    RegexParsers → Parsers

  68. def quotedProp(p: String): Parser[String]

    Definition Classes
    MetadataParsers

  69. def reference: Parser[Reference]

    Definition Classes
    MetadataParsers

  70. implicit def regex(r: Regex): Parser[String]

    Definition Classes
    RegexParsers

  71. def rep[T](p: ⇒ Parser[T]): Parser[List[T]]

    Definition Classes
    Parsers

  72. def rep1[T](first: ⇒ Parser[T], p0: ⇒ Parser[T]): Parser[List[T]]

    Definition Classes
    Parsers
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) The p0 call-by-name arguments is evaluated at most once per constructed Parser object, instead of on every need that arises during parsing.

  73. def rep1[T](p: ⇒ Parser[T]): Parser[List[T]]

    Definition Classes
    Parsers

  74. def rep1sep[T](p: ⇒ Parser[T], q: ⇒ Parser[Any]): Parser[List[T]]

    Definition Classes
    Parsers

  75. def repN[T](num: Int, p: ⇒ Parser[T]): Parser[List[T]]

    Definition Classes
    Parsers

  76. def repsep[T](p: ⇒ Parser[T], q: ⇒ Parser[Any]): Parser[List[T]]

    Definition Classes
    Parsers

  77. def samples: Parser[List[Sample]]

    Definition Classes
    MetadataParsers

  78. def shortTyped: Parser[RestrictedType]

    Definition Classes
    MetadataParsers

  79. def skip(n: Int): Parser[Unit]

    Definition Classes
    TsvParsers

  80. def skipWhitespace: Boolean

    Definition Classes
    RegexParsers

  81. def strProp(p: String): Parser[String]

    Definition Classes
    MetadataParsers

  82. def stringLiteral: Parser[String]

    Definition Classes
    JavaTokenParsers
    Annotations
    @migration
    Migration

    (Changed in version 2.10.0) stringLiteral allows escaping single and double quotes, but not forward slashes any longer.

  83. def success[T](v: T): Parser[T]

    Definition Classes
    Parsers

  84. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  85. val tab: Parser[String]

    Attributes
    protected
    Definition Classes
    TsvParsers

  86. def toString(): String

    Definition Classes
    AnyRef → Any

  87. def typed: Parser[Type]

    Definition Classes
    MetadataParsers

  88. def types: Parser[RestrictedType with Product with Serializable]

    Definition Classes
    MetadataParsers

  89. def unhandled: Parser[Unhandled]

    Definition Classes
    MetadataParsers

  90. def version: Parser[Version]

    Definition Classes
    MetadataParsers

  91. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  92. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  93. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  94. val whiteSpace: Regex

    Attributes
    protected
    Definition Classes
    TsvParsers → RegexParsers

  95. def whitespace: Parser[Unhandled]

    Definition Classes
    MetadataParsers

  96. def wholeNumber: Parser[String]

    Definition Classes
    JavaTokenParsers

Deprecated Value Members

  1. def lastNoSuccess: NoSuccess

    Definition Classes
    Parsers
    Annotations
    @deprecated
    Deprecated

    (Since version 2.10.0) lastNoSuccess was not thread-safe and will be removed in 2.11.0

  2. def lastNoSuccess_=(x: NoSuccess): Unit

    Definition Classes
    Parsers
    Annotations
    @deprecated
    Deprecated

    (Since version 2.10.0) lastNoSuccess was not thread-safe and will be removed in 2.11.0

Inherited from MetadataParsers

Inherited from TsvParsers

Inherited from JavaTokenParsers

Inherited from RegexParsers

Inherited from Parsers

Inherited from AnyRef

Inherited from Any

Ungrouped