AnnovarTsvParsers

abstract def desc: Descriptor

final def !=(arg0: AnyRef): Boolean

final def !=(arg0: Any): Boolean

final def ##(): Int

final def ==(arg0: AnyRef): Boolean

final def ==(arg0: Any): Boolean

implicit def FieldOps[A](a: Parser[A]): FieldOps[A]

def OnceParser[T](f: (Input) ⇒ ParseResult[T]): Parser[T] with OnceParser[T]

def Parser[T](f: (Input) ⇒ ParseResult[T]): Parser[T]

def accept[U](expected: String, f: PartialFunction[Elem, U]): Parser[U]

def accept[ES](es: ES)(implicit arg0: (ES) ⇒ List[Elem]): Parser[List[Elem]]

implicit def accept(e: Elem): Parser[Elem]

def acceptIf(p: (Elem) ⇒ Boolean)(err: (Elem) ⇒ String): Parser[Elem]

def acceptMatch[U](expected: String, f: PartialFunction[Elem, U]): Parser[U]

def acceptSeq[ES](es: ES)(implicit arg0: (ES) ⇒ Iterable[Elem]): Parser[List[Elem]]

val allFields: Parser[List[String]]

lazy val alternates: Parser[List[Alternate]]

def annovarRow: Parser[(VariantID, List[(Info, List[VcfValue])])]

Returns a parser that can parse a row of an Annovar output file (w/ VCF info included).

final def asInstanceOf[T0]: T0

lazy val breakend: Parser[Breakend]

def chainl1[T, U](first: ⇒ Parser[T], p: ⇒ Parser[U], q: ⇒ Parser[(T, U) ⇒ T]): Parser[T]

def chainl1[T](p: ⇒ Parser[T], q: ⇒ Parser[(T, T) ⇒ T]): Parser[T]

def chainr1[T, U](p: ⇒ Parser[T], q: ⇒ Parser[(T, U) ⇒ U], combine: (T, U) ⇒ U, first: U): Parser[U]

lazy val chromosome: Parser[Chromosome]

lazy val chromosomePosition: Parser[~[Chromosome, Int]]

def clone(): AnyRef

def commit[T](p: ⇒ Parser[T]): Parser[T]

def decimalNumber: Parser[String]

def elem(e: Elem): Parser[Elem]

def elem(kind: String, p: (Elem) ⇒ Boolean): Parser[Elem]

final def eq(arg0: AnyRef): Boolean

def equals(arg0: Any): Boolean

def err(msg: String): Parser[Nothing]

def failure(msg: String): Parser[Nothing]

val field: Parser[String]

lazy val filterName: Parser[Filter]

lazy val filters: Parser[FilterResult]

def finalize(): Unit

def floatingPointNumber: Parser[String]

final def getClass(): Class[_]

def getParser(info: Metadata with HasArity with HasType, genotypeCount: Option[Int], alleleCount: Int): Parser[List[VcfValue]]

def guard[T](p: ⇒ Parser[T]): Parser[T]

def handleWhiteSpace(source: CharSequence, offset: Int): Int

def hashCode(): Int

def ident: Parser[String]

lazy val ids: Parser[List[String]]

def info(alleleCount: Int): Parser[Map[Info, List[VcfValue]]]

def infoField(alleleCount: Int): Parser[(Info, List[VcfValue])]

final def isInstanceOf[T0]: Boolean

implicit def literal(s: String): Parser[String]

def log[T](p: ⇒ Parser[T])(name: String): Parser[T]

def mkList[T]: (~[T, List[T]]) ⇒ List[T]

final def ne(arg0: AnyRef): Boolean

def not[T](p: ⇒ Parser[T]): Parser[Unit]

final def notify(): Unit

final def notifyAll(): Unit

def opt[T](p: ⇒ Parser[T]): Parser[Option[T]]

def optional[A](p: ⇒ Parser[A]): Parser[Option[A]]

def parse[T](p: Parser[T], in: Reader): ParseResult[T]

def parse[T](p: Parser[T], in: CharSequence): ParseResult[T]

def parse[T](p: Parser[T], in: Reader[Char]): ParseResult[T]

def parseAll[T](p: Parser[T], in: CharSequence): ParseResult[T]

def parseAll[T](p: Parser[T], in: Reader): ParseResult[T]

def parseAll[T](p: Parser[T], in: Reader[Char]): ParseResult[T]

def phrase[T](p: Parser[T]): Parser[T]

lazy val position: Parser[Int]

def positioned[T <: Positional](p: ⇒ Parser[T]): Parser[T]

lazy val quality: Parser[Double]

lazy val ref: Parser[String]

implicit def regex(r: Regex): Parser[String]

def rep[T](p: ⇒ Parser[T]): Parser[List[T]]

def rep1[T](first: ⇒ Parser[T], p0: ⇒ Parser[T]): Parser[List[T]]

def rep1[T](p: ⇒ Parser[T]): Parser[List[T]]

def rep1sep[T](p: ⇒ Parser[T], q: ⇒ Parser[Any]): Parser[List[T]]

def repN[T](num: Int, p: ⇒ Parser[T]): Parser[List[T]]

def repNsep[A](n: Int, p: ⇒ Parser[A], sep: ⇒ Parser[Any]): Parser[List[A]]

def repsep[T](p: ⇒ Parser[T], q: ⇒ Parser[Any]): Parser[List[T]]

lazy val sequence: Parser[String]

def skip(n: Int): Parser[Unit]

def skipWhitespace: Boolean

def stringLiteral: Parser[String]

def success[T](v: T): Parser[T]

final def synchronized[T0](arg0: ⇒ T0): T0

val tab: Parser[String]

def toString(): String

lazy val variant: Parser[Variant]

def variantId: Parser[VariantID]

val vcfCharacter: Parser[VcfCharacter]

val vcfFlag: Parser[VcfFlag.type]

val vcfFloat: Parser[VcfFloat]

lazy val vcfId: Parser[VcfId]

lazy val vcfInfo: VcfInfo

val vcfInteger: Parser[VcfInteger]

val vcfMissing: Parser[VcfMissing.type]

val vcfNonNegativeInteger: Parser[VcfInteger]

def vcfString(pattern: Regex): Parser[VcfValue]

final def wait(): Unit

final def wait(arg0: Long, arg1: Int): Unit

final def wait(arg0: Long): Unit

val whiteSpace: Regex

def wholeNumber: Parser[String]

def lastNoSuccess: NoSuccess

def lastNoSuccess_=(x: NoSuccess): Unit