ca.innovativemedicine.vcf.app

FlattenParams

case class FlattenParams(vcfFile: Either[InputStream, File] = ..., prefix: Option[String] = scala.None, pattern: String = "%p-%s-%i.tsv", merged: Boolean = false, info: Option[List[String]] = scala.None, genotype: Option[List[String]] = scala.None, skipHeader: Boolean = false, ignoreErrors: Boolean = false) extends Product with Serializable

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  1. FlattenParams
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Instance Constructors

  1. new FlattenParams(vcfFile: Either[InputStream, File] = ..., prefix: Option[String] = scala.None, pattern: String = "%p-%s-%i.tsv", merged: Boolean = false, info: Option[List[String]] = scala.None, genotype: Option[List[String]] = scala.None, skipHeader: Boolean = false, ignoreErrors: Boolean = false)

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  9. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. val genotype: Option[List[String]]

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  12. def getOutFile(s: String, i: Int): String

  13. val ignoreErrors: Boolean

  14. val info: Option[List[String]]

  15. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  16. val merged: Boolean

  17. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  18. final def notify(): Unit

    Definition Classes
    AnyRef

  19. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  20. val pattern: String

  21. lazy val preferredPrefix: String

  22. val prefix: Option[String]

  23. def singleFile: Boolean

    Returns true if these params are only valid for outputting a single file.

  24. val skipHeader: Boolean

  25. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  26. val vcfFile: Either[InputStream, File]

  27. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  28. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
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    @throws( ... )

  29. final def wait(arg0: Long): Unit

    Definition Classes
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    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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