Class

com.bnd.chemistry.domain

AcDNAStrandSpeciesSet

Related Doc: package domain

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class AcDNAStrandSpeciesSet extends AcSpeciesSet

Linear Supertypes
AcSpeciesSet, AcVariableSet[AcSpecies], AcVariableSetIF[AcSpecies], AcVariableGroupIF[AcSpecies], TechnicalDomainObject, DomainObject[Long], Serializable, KeyHolder[Long], AnyRef, Any
Ordering
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  2. By Inheritance
Inherited
  1. AcDNAStrandSpeciesSet
  2. AcSpeciesSet
  3. AcVariableSet
  4. AcVariableSetIF
  5. AcVariableGroupIF
  6. TechnicalDomainObject
  7. DomainObject
  8. Serializable
  9. KeyHolder
  10. AnyRef
  11. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new AcDNAStrandSpeciesSet()

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. def addFullDoubleStrand(fullDoubleStrand: AcCompositeSpecies): Unit

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  5. def addLowerStrand(lowerStrand: AcSpecies): Unit

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  6. def addPartialDoubleStrand(partialDoubleStrand: AcCompositeSpecies): Unit

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  7. def addSpeciesToGroup(type: AcSpeciesType, species: AcSpecies): Unit

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    Definition Classes
    AcSpeciesSet
  8. def addUpperStrand(upperStrand: AcSpecies): Unit

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  9. def addVariable(variable: AcSpecies): Unit

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    Definition Classes
    AcVariableSetAcVariableGroupIF
  10. def addVariables(variables: Collection[AcSpecies]): Unit

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    Definition Classes
    AcVariableSetAcVariableGroupIF
  11. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  12. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  13. def containsVariable(variable: AcSpecies): Boolean

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    Attributes
    protected[com.bnd.chemistry.domain]
    Definition Classes
    AcVariableSet
  14. def copyFrom(arg0: DomainObject[Long]): Unit

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    Definition Classes
    DomainObject
  15. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  16. def equals(arg0: Any): Boolean

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    Definition Classes
    DomainObject → AnyRef → Any
  17. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  18. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  19. def getCreateTime(): Date

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    Definition Classes
    AcVariableSet
  20. def getCreatedBy(): User

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    Definition Classes
    AcVariableSet
  21. def getFullDoubleStrands(): Collection[AcCompositeSpecies]

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  22. def getId(): Long

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    Definition Classes
    TechnicalDomainObject
  23. def getInternalSpecies(): Collection[AcSpecies]

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    Definition Classes
    AcSpeciesSet
  24. def getKey(): Long

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    Definition Classes
    TechnicalDomainObject → KeyHolder
  25. def getLevel(): Int

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    Definition Classes
    AcSpeciesSet
  26. def getLowerStrands(): Collection[AcSpecies]

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  27. def getName(): String

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    Definition Classes
    AcVariableSet
  28. def getNextVarSequenceNum(): Integer

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    Definition Classes
    AcSpeciesSetAcVariableSetIF
  29. def getNonInputFeedbackSpecies(): Collection[AcSpecies]

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    Definition Classes
    AcSpeciesSet
  30. def getNonInternalSpecies(): Collection[AcSpecies]

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    Definition Classes
    AcSpeciesSet
  31. def getOwnAndInheritedSpecies(type: AcSpeciesType): Collection[AcSpecies]

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    Definition Classes
    AcSpeciesSet
  32. def getOwnAndInheritedVariables(): Collection[AcSpecies]

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    Definition Classes
    AcSpeciesSetAcVariableSetAcVariableSetIF
  33. def getOwnAndInheritedVariablesSorted(): Collection[AcSpecies]

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    Definition Classes
    AcVariableSet
  34. def getParameterSet(): AcParameterSet

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    Definition Classes
    AcSpeciesSet
  35. def getParentSpeciesSet(): AcSpeciesSet

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    Definition Classes
    AcSpeciesSet
  36. def getPartialDoubleStrands(): Collection[AcCompositeSpecies]

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  37. def getSpecies(type: AcSpeciesType): Collection[AcSpecies]

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    Definition Classes
    AcSpeciesSet
  38. def getSpeciesGroup(type: AcSpeciesType): AcSpeciesGroup

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    Definition Classes
    AcSpeciesSet
  39. def getSpeciesGroupMap(): Map[String, AcSpeciesGroup]

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    Definition Classes
    AcSpeciesSet
  40. def getSpeciesNumber(type: AcSpeciesType): Int

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    Definition Classes
    AcSpeciesSet
  41. def getUpperStrands(): Collection[AcSpecies]

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  42. def getVarSequenceNum(): Integer

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    Definition Classes
    AcSpeciesSet
  43. def getVariables(): Collection[AcSpecies]

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    Definition Classes
    AcVariableSetAcVariableGroupIF
  44. def getVariablesNumber(): Int

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    Definition Classes
    AcSpeciesSetAcVariableSet
  45. def getVariablesSorted(): Collection[AcSpecies]

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    Definition Classes
    AcVariableSet
  46. def getVersion(): Long

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    Definition Classes
    TechnicalDomainObject
  47. def hasOwnVariables(): Boolean

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    Definition Classes
    AcVariableSet
  48. def hasParentSpeciesSet(): Boolean

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    Definition Classes
    AcSpeciesSet
  49. def hasSpecies(type: AcSpeciesType): Boolean

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    Definition Classes
    AcSpeciesSet
  50. def hashCode(): Int

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    Definition Classes
    DomainObject → AnyRef → Any
  51. def initVarSequenceNum(): Unit

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    Definition Classes
    AcSpeciesSet
  52. def initVariables(): Unit

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    Definition Classes
    AcVariableSetAcVariableGroupIF
  53. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  54. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  55. final def notify(): Unit

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    Definition Classes
    AnyRef
  56. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  57. def removeVariable(variable: AcSpecies): Unit

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    Definition Classes
    AcVariableSetAcVariableGroupIF
  58. def setCreateTime(createTime: Date): Unit

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    Definition Classes
    AcVariableSet
  59. def setCreatedBy(createdBy: User): Unit

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    Definition Classes
    AcVariableSet
  60. def setFullDoubleStrands(fullDoubleStrands: Collection[AcCompositeSpecies]): Unit

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  61. def setId(arg0: Long): Unit

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    Definition Classes
    TechnicalDomainObject
  62. def setKey(arg0: Long): Unit

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    Definition Classes
    TechnicalDomainObject → KeyHolder
  63. def setLowerStrands(lowerStrands: Collection[AcSpecies]): Unit

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  64. def setName(name: String): Unit

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    Definition Classes
    AcVariableSet
  65. def setParameterSet(parameterSet: AcParameterSet): Unit

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    Definition Classes
    AcSpeciesSet
  66. def setParentSpeciesSet(parentSpeciesSet: AcSpeciesSet): Unit

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    Definition Classes
    AcSpeciesSet
  67. def setPartialDoubleStrands(partialDoubleStrands: Collection[AcCompositeSpecies]): Unit

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  68. def setSpeciesGroupMap(speciesGroupMap: Map[String, AcSpeciesGroup]): Unit

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    Definition Classes
    AcSpeciesSet
  69. def setUpperStrands(upperStrands: Collection[AcSpecies]): Unit

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  70. def setVarSequenceNum(sequenceNum: Integer): Unit

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    Definition Classes
    AcSpeciesSet
  71. def setVariables(variables: Collection[AcSpecies]): Unit

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    Definition Classes
    AcVariableSetAcVariableGroupIF
  72. def setVersion(arg0: Long): Unit

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    Definition Classes
    TechnicalDomainObject
  73. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  74. def toString(): String

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    Definition Classes
    AcVariableSet → DomainObject → AnyRef → Any
  75. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  76. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  77. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from AcSpeciesSet

Inherited from AcVariableSet[AcSpecies]

Inherited from AcVariableSetIF[AcSpecies]

Inherited from AcVariableGroupIF[AcSpecies]

Inherited from TechnicalDomainObject

Inherited from DomainObject[Long]

Inherited from Serializable

Inherited from KeyHolder[Long]

Inherited from AnyRef

Inherited from Any

Ungrouped