com
.
bnd
.
chemistry
.
domain
AcDNAStrandSpeciesSet
Related Doc:
package domain
class
AcDNAStrandSpeciesSet
extends
AcSpeciesSet
Linear Supertypes
AcSpeciesSet
,
AcVariableSet
[
AcSpecies
],
AcVariableSetIF
[
AcSpecies
],
AcVariableGroupIF
[
AcSpecies
],
TechnicalDomainObject
,
DomainObject
[
Long
],
Serializable
,
KeyHolder
[
Long
],
AnyRef
,
Any
Ordering
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By Inheritance
Inherited
AcDNAStrandSpeciesSet
AcSpeciesSet
AcVariableSet
AcVariableSetIF
AcVariableGroupIF
TechnicalDomainObject
DomainObject
Serializable
KeyHolder
AnyRef
Any
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Public
All
Instance Constructors
new
AcDNAStrandSpeciesSet
()
Value Members
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
final
def
##
()
:
Int
Definition Classes
AnyRef → Any
final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
def
addFullDoubleStrand
(
fullDoubleStrand:
AcCompositeSpecies
)
:
Unit
def
addLowerStrand
(
lowerStrand:
AcSpecies
)
:
Unit
def
addPartialDoubleStrand
(
partialDoubleStrand:
AcCompositeSpecies
)
:
Unit
def
addSpeciesToGroup
(
type:
AcSpeciesType
,
species:
AcSpecies
)
:
Unit
Definition Classes
AcSpeciesSet
def
addUpperStrand
(
upperStrand:
AcSpecies
)
:
Unit
def
addVariable
(
variable:
AcSpecies
)
:
Unit
Definition Classes
AcVariableSet
→
AcVariableGroupIF
def
addVariables
(
variables:
Collection
[
AcSpecies
]
)
:
Unit
Definition Classes
AcVariableSet
→
AcVariableGroupIF
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
...
)
def
containsVariable
(
variable:
AcSpecies
)
:
Boolean
Attributes
protected[
com.bnd.chemistry.domain
]
Definition Classes
AcVariableSet
def
copyFrom
(
arg0:
DomainObject
[
Long
]
)
:
Unit
Definition Classes
DomainObject
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
DomainObject → AnyRef → Any
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
classOf[java.lang.Throwable]
)
final
def
getClass
()
:
Class
[_]
Definition Classes
AnyRef → Any
def
getCreateTime
()
:
Date
Definition Classes
AcVariableSet
def
getCreatedBy
()
:
User
Definition Classes
AcVariableSet
def
getFullDoubleStrands
()
:
Collection
[
AcCompositeSpecies
]
def
getId
()
:
Long
Definition Classes
TechnicalDomainObject
def
getInternalSpecies
()
:
Collection
[
AcSpecies
]
Definition Classes
AcSpeciesSet
def
getKey
()
:
Long
Definition Classes
TechnicalDomainObject → KeyHolder
def
getLevel
()
:
Int
Definition Classes
AcSpeciesSet
def
getLowerStrands
()
:
Collection
[
AcSpecies
]
def
getName
()
:
String
Definition Classes
AcVariableSet
def
getNextVarSequenceNum
()
:
Integer
Definition Classes
AcSpeciesSet
→
AcVariableSetIF
def
getNonInputFeedbackSpecies
()
:
Collection
[
AcSpecies
]
Definition Classes
AcSpeciesSet
def
getNonInternalSpecies
()
:
Collection
[
AcSpecies
]
Definition Classes
AcSpeciesSet
def
getOwnAndInheritedSpecies
(
type:
AcSpeciesType
)
:
Collection
[
AcSpecies
]
Definition Classes
AcSpeciesSet
def
getOwnAndInheritedVariables
()
:
Collection
[
AcSpecies
]
Definition Classes
AcSpeciesSet
→
AcVariableSet
→
AcVariableSetIF
def
getOwnAndInheritedVariablesSorted
()
:
Collection
[
AcSpecies
]
Definition Classes
AcVariableSet
def
getParameterSet
()
:
AcParameterSet
Definition Classes
AcSpeciesSet
def
getParentSpeciesSet
()
:
AcSpeciesSet
Definition Classes
AcSpeciesSet
def
getPartialDoubleStrands
()
:
Collection
[
AcCompositeSpecies
]
def
getSpecies
(
type:
AcSpeciesType
)
:
Collection
[
AcSpecies
]
Definition Classes
AcSpeciesSet
def
getSpeciesGroup
(
type:
AcSpeciesType
)
:
AcSpeciesGroup
Definition Classes
AcSpeciesSet
def
getSpeciesGroupMap
()
:
Map
[
String
,
AcSpeciesGroup
]
Definition Classes
AcSpeciesSet
def
getSpeciesNumber
(
type:
AcSpeciesType
)
:
Int
Definition Classes
AcSpeciesSet
def
getUpperStrands
()
:
Collection
[
AcSpecies
]
def
getVarSequenceNum
()
:
Integer
Definition Classes
AcSpeciesSet
def
getVariables
()
:
Collection
[
AcSpecies
]
Definition Classes
AcVariableSet
→
AcVariableGroupIF
def
getVariablesNumber
()
:
Int
Definition Classes
AcSpeciesSet
→
AcVariableSet
def
getVariablesSorted
()
:
Collection
[
AcSpecies
]
Definition Classes
AcVariableSet
def
getVersion
()
:
Long
Definition Classes
TechnicalDomainObject
def
hasOwnVariables
()
:
Boolean
Definition Classes
AcVariableSet
def
hasParentSpeciesSet
()
:
Boolean
Definition Classes
AcSpeciesSet
def
hasSpecies
(
type:
AcSpeciesType
)
:
Boolean
Definition Classes
AcSpeciesSet
def
hashCode
()
:
Int
Definition Classes
DomainObject → AnyRef → Any
def
initVarSequenceNum
()
:
Unit
Definition Classes
AcSpeciesSet
def
initVariables
()
:
Unit
Definition Classes
AcVariableSet
→
AcVariableGroupIF
final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
def
removeVariable
(
variable:
AcSpecies
)
:
Unit
Definition Classes
AcVariableSet
→
AcVariableGroupIF
def
setCreateTime
(
createTime:
Date
)
:
Unit
Definition Classes
AcVariableSet
def
setCreatedBy
(
createdBy:
User
)
:
Unit
Definition Classes
AcVariableSet
def
setFullDoubleStrands
(
fullDoubleStrands:
Collection
[
AcCompositeSpecies
]
)
:
Unit
def
setId
(
arg0:
Long
)
:
Unit
Definition Classes
TechnicalDomainObject
def
setKey
(
arg0:
Long
)
:
Unit
Definition Classes
TechnicalDomainObject → KeyHolder
def
setLowerStrands
(
lowerStrands:
Collection
[
AcSpecies
]
)
:
Unit
def
setName
(
name:
String
)
:
Unit
Definition Classes
AcVariableSet
def
setParameterSet
(
parameterSet:
AcParameterSet
)
:
Unit
Definition Classes
AcSpeciesSet
def
setParentSpeciesSet
(
parentSpeciesSet:
AcSpeciesSet
)
:
Unit
Definition Classes
AcSpeciesSet
def
setPartialDoubleStrands
(
partialDoubleStrands:
Collection
[
AcCompositeSpecies
]
)
:
Unit
def
setSpeciesGroupMap
(
speciesGroupMap:
Map
[
String
,
AcSpeciesGroup
]
)
:
Unit
Definition Classes
AcSpeciesSet
def
setUpperStrands
(
upperStrands:
Collection
[
AcSpecies
]
)
:
Unit
def
setVarSequenceNum
(
sequenceNum:
Integer
)
:
Unit
Definition Classes
AcSpeciesSet
def
setVariables
(
variables:
Collection
[
AcSpecies
]
)
:
Unit
Definition Classes
AcVariableSet
→
AcVariableGroupIF
def
setVersion
(
arg0:
Long
)
:
Unit
Definition Classes
TechnicalDomainObject
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
toString
()
:
String
Definition Classes
AcVariableSet
→ DomainObject → AnyRef → Any
final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
Inherited from
AcSpeciesSet
Inherited from
AcVariableSet
[
AcSpecies
]
Inherited from
AcVariableSetIF
[
AcSpecies
]
Inherited from
AcVariableGroupIF
[
AcSpecies
]
Inherited from
TechnicalDomainObject
Inherited from
DomainObject
[
Long
]
Inherited from
Serializable
Inherited from
KeyHolder
[
Long
]
Inherited from
AnyRef
Inherited from
Any
Ungrouped