object ReadStructure
Companion object for ReadStructure that provides factory methods.
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sealed
trait
SubRead
extends AnyRef
Contains the bases and optionally base qualities that correspond to the given read segment.
- case class SubReadWithQuals (bases: String, quals: String, segment: ReadSegment) extends SubRead with Product with Serializable
- case class SubReadWithoutQuals (bases: String, segment: ReadSegment) extends SubRead with Product with Serializable
Value Members
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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final
def
==(arg0: Any): Boolean
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val
AnyLengthChar: Char
A character that can be put in place of a number in a read structure to mean "0 or more bases".
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def
apply(readStructure: String): ReadStructure
Creates a read structure from a string
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def
apply(segments: Seq[ReadSegment], resetOffsets: Boolean = false): ReadStructure
Creates a new ReadStructure, optionally resetting the offsets on each of the segments.
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final
def
asInstanceOf[T0]: T0
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def
clone(): AnyRef
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final
def
eq(arg0: AnyRef): Boolean
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def
equals(arg0: Any): Boolean
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def
finalize(): Unit
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final
def
getClass(): Class[_]
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def
hashCode(): Int
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final
def
isInstanceOf[T0]: Boolean
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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def
synchronized[T0](arg0: ⇒ T0): T0
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def
toString(): String
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final
def
wait(): Unit
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final
def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
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