class SampleSheet extends Iterable[Sample]
Stores information about samples from an Illumina Experiment Manager Sample Sheet (typically a MiSeq). The samples may also include derived information.
Optional fields include support for specifying the expected sample barcode for each sample. The sample barcode can be present as a sub-sequence (or sub-sequences) in the i7 or i5 read. If additional bases are found in the i7 or i5 read, such as molecular barcodes, the should be included as Ns. It is up to the developer to obtain the correct read structure elsewhere to infer which bases are sample barcode and which bases are not (ex. molecular identifiers).
The sample identifier should be unique across samples within the sample sheet, and the combination of sample name and library identifier should also be unique across samples within the sample sheet.
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def
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def
ensuring(cond: (SampleSheet) ⇒ Boolean, msg: ⇒ Any): SampleSheet
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- This member is added by an implicit conversion from SampleSheet to Ensuring[SampleSheet] performed by method Ensuring in scala.Predef.
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ensuring(cond: (SampleSheet) ⇒ Boolean): SampleSheet
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def
ensuring(cond: Boolean, msg: ⇒ Any): SampleSheet
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ensuring(cond: Boolean): SampleSheet
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formatted(fmtstr: String): String
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(Changed in version 2.9.0) The behavior of
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toParArray: ParArray[T]
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- This member is added by an implicit conversion from SampleSheet to CollectionsHaveToParArray[SampleSheet, T] performed by method CollectionsHaveToParArray in scala.collection.parallel. This conversion will take place only if an implicit value of type (SampleSheet) ⇒ GenTraversableOnce[T] is in scope.
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(Changed in version 2.9.0)
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throws anIllegalArgumentException
if collections are not uniformly sized.
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def
→[B](y: B): (SampleSheet, B)
- Implicit
- This member is added by an implicit conversion from SampleSheet to ArrowAssoc[SampleSheet] performed by method ArrowAssoc in scala.Predef.
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Shadowed Implicit Value Members
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def
filter(p: (Sample) ⇒ Boolean): TraversableOnce[Sample]
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def
flatMap[B](f: (Sample) ⇒ GenTraversableOnce[B]): TraversableOnce[B]
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def
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