Class

nl.biopet.tools.mergesv

Args

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case class Args(inputFiles: Map[String, List[File]] = Map(), callerFields: Map[String, Set[String]] = Map(), outputFile: File = null, referenceFasta: File = null, windowsSize: Int = 1000, defaultCi: Int = 75, keepNonVariant: Boolean = false) extends Product with Serializable

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Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. Args
  2. Serializable
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Instance Constructors

  1. new Args(inputFiles: Map[String, List[File]] = Map(), callerFields: Map[String, Set[String]] = Map(), outputFile: File = null, referenceFasta: File = null, windowsSize: Int = 1000, defaultCi: Int = 75, keepNonVariant: Boolean = false)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. def addFile(key: String, file: File): Args

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  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. val callerFields: Map[String, Set[String]]

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  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. val defaultCi: Int

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  9. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  10. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  12. val inputFiles: Map[String, List[File]]

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  13. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  14. val keepNonVariant: Boolean

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  15. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  16. final def notify(): Unit

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    Definition Classes
    AnyRef

  17. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  18. val outputFile: File

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  19. val referenceFasta: File

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  20. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
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  21. final def wait(): Unit

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    @throws( ... )

  22. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  23. final def wait(arg0: Long): Unit

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    Definition Classes
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    Annotations
    @throws( ... )

  24. val windowsSize: Int

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Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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