package
annotation
Type Members
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case class
Exon(start: Int, end: Int) extends Product with Serializable
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case class
Feature(contig: String, source: String, feature: String, start: Int, end: Int, score: Option[Double], strand: Option[Boolean], frame: Option[Char], attributes: Map[String, String]) extends Product with Serializable
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case class
Gene(name: String, contig: String, start: Int, end: Int, strand: Boolean, transcripts: List[Transcript]) extends Product with Serializable
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case class
Transcript(name: String, transcriptionStart: Int, transcriptionEnd: Int, codingStart: Option[Int], codingEnd: Option[Int], exons: List[Exon]) extends Product with Serializable
Value Members
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object
Feature extends Serializable
This class can store a gtf or gff line.
Created by pjvanthof on 14/05/2017.