BedRecordList

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. final def asInstanceOf[T0]: T0

   

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5. def clone(): AnyRef

   

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6. def empty: BedRecordList

   

   This created a empty BedRecordList

7. final def eq(arg0: AnyRef): Boolean

   

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8. def equals(arg0: Any): Boolean

   

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9. def finalize(): Unit

   

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10. def fromDict(dict: SAMSequenceDictionary): BedRecordList

    

11. def fromFile(bedFile: File): BedRecordList

    

12. def fromFiles(bedFiles: Seq[File], combine: Boolean = false): BedRecordList

    

    This creates a BedRecordList based on multiple files

    This creates a BedRecordList based on multiple files

    bedFiles

    Input bed files

    combine

    When true overlaping regions are merged

13. def fromFilesCombine(bedFiles: File*): BedRecordList

    

    This creates a BedRecordList based on multiple files.

    This creates a BedRecordList based on multiple files. This method combines overlapping regions

    bedFiles

    Input bed files

14. def fromList(records: TraversableOnce[BedRecord]): BedRecordList

    

15. def fromList(records: Traversable[BedRecord]): BedRecordList

    

16. def fromListWithHeader(records: TraversableOnce[BedRecord], header: List[String]): BedRecordList

    

17. def fromListWithHeader(records: Traversable[BedRecord], header: List[String]): BedRecordList

    

18. def fromReference(file: File): BedRecordList

    

19. final def getClass(): Class[_]

    

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20. def hashCode(): Int

    

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21. final def isInstanceOf[T0]: Boolean

    

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22. final def ne(arg0: AnyRef): Boolean

    

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23. final def notify(): Unit

    

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24. final def notifyAll(): Unit

    

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25. final def synchronized[T0](arg0: ⇒ T0): T0

    

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26. def toString(): String

    

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27. final def wait(): Unit

    

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28. final def wait(arg0: Long, arg1: Int): Unit

    

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29. final def wait(arg0: Long): Unit

    

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