Class

nl.biopet.utils.ngs.vcf

InfoFieldCounts

Related Doc: package vcf

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class InfoFieldCounts extends Serializable

This class will track all possible value of a single INFO field

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Serializable, Serializable, AnyRef, Any
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  1. InfoFieldCounts
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Instance Constructors

  1. new InfoFieldCounts(field: VCFInfoHeaderLine, method: FieldMethod.Value)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
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  2. final def ##(): Int

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    Definition Classes
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  3. def +=(other: InfoFieldCounts): InfoFieldCounts

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    Combining an other InfoFieldCounts into this

  4. final def ==(arg0: Any): Boolean

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  5. var _noValue: Long

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    Attributes
    protected

  6. var _total: Long

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    Attributes
    protected

  7. def addRecord(record: VariantContext): Unit

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    Add record to counts

  8. def asHistrogram: Histogram[Double]

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    Convert strings to doubles if possible

  9. final def asInstanceOf[T0]: T0

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  10. def clone(): AnyRef

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    Attributes
    protected[java.lang]
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    Annotations
    @throws( ... )

  11. val counts: Counts[String]

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    Attributes
    protected

  12. def countsMap: Map[String, Long]

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    Returns a map of the counts

  13. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
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  14. def equals(arg0: Any): Boolean

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  15. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )

  16. final def getClass(): Class[_]

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  17. def hashCode(): Int

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  18. final def isInstanceOf[T0]: Boolean

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    Definition Classes
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  19. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
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  20. def noValue: Long

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    Return number of records that does not have this field

  21. final def notify(): Unit

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    Definition Classes
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  22. final def notifyAll(): Unit

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  23. final def synchronized[T0](arg0: ⇒ T0): T0

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  24. def toString(): String

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  25. def total: Long

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    Return total number of records

  26. final def wait(): Unit

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    @throws( ... )

  27. final def wait(arg0: Long, arg1: Int): Unit

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  28. final def wait(arg0: Long): Unit

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  29. def writeHistogram(outputFile: File): Unit

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    Write histogram to a file

    Write histogram to a file

    outputFile

    File to write to

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