Class/Object

nl.biopet.utils.ngs.annotation

Feature

Related Docs: object Feature | package annotation

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case class Feature(contig: String, source: String, feature: String, start: Int, end: Int, score: Option[Double], strand: Option[Boolean], frame: Option[Char], attributes: Map[String, String]) extends Product with Serializable

This class can store a gtf or gff line.

Created by pjvanthof on 14/05/2017.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. Feature
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
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Instance Constructors

  1. new Feature(contig: String, source: String, feature: String, start: Int, end: Int, score: Option[Double], strand: Option[Boolean], frame: Option[Char], attributes: Map[String, String])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. def asGff3Line: String

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  5. def asGtfLine: String

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  6. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  7. val attributes: Map[String, String]

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  8. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. val contig: String

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  10. val end: Int

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  11. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  12. val feature: String

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  13. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  14. val frame: Option[Char]

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  15. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  16. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  17. def maxPosition: Int

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  18. def minPosition: Int

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  19. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  20. final def notify(): Unit

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    Definition Classes
    AnyRef

  21. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  22. val score: Option[Double]

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  23. val source: String

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  24. val start: Int

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  25. val strand: Option[Boolean]

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  26. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  27. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  28. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  29. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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