Class

nl.biopet.utils.ngs.bam

BiopetSamDict

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implicit class BiopetSamDict extends AnyRef

This class will add functionality to SAMSequenceDictionary

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Instance Constructors

  1. new BiopetSamDict(samDicts: SAMSequenceDictionary)

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def assertSameDictionary(that: SAMSequenceDictionary, ignoreOrder: Boolean): Unit

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    This method will check if all contig and sizes are the same without looking at the order of the contigs

    This method will check if all contig and sizes are the same without looking at the order of the contigs

    that

    Dict to compare to

    ignoreOrder

    When true the order of the contig does not matter

    Exceptions thrown

  6. def clone(): AnyRef

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  9. def finalize(): Unit

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  10. final def getClass(): Class[_]

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  11. def hashCode(): Int

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  12. final def isInstanceOf[T0]: Boolean

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  13. final def ne(arg0: AnyRef): Boolean

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  14. final def notify(): Unit

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  15. final def notifyAll(): Unit

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  16. final def synchronized[T0](arg0: ⇒ T0): T0

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  17. def toString(): String

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  18. final def wait(): Unit

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  19. final def wait(arg0: Long, arg1: Int): Unit

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  20. final def wait(arg0: Long): Unit

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