Class/Object

nl.biopet.utils.ngs.vcf

GenotypeStats

Related Docs: object GenotypeStats | package vcf

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class GenotypeStats extends Serializable

This class will collect general stats from vcf records

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Serializable, Serializable, AnyRef, Any
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  1. GenotypeStats
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Instance Constructors

  1. new GenotypeStats(header: VCFHeader)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
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  2. final def ##(): Int

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  3. def +=(other: GenotypeStats): GenotypeStats

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    Combine multiple classes into 1

  4. final def ==(arg0: Any): Boolean

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  5. def addRecord(record: VariantContext): Unit

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    Adding a VariantContext to the counts

  6. final def asInstanceOf[T0]: T0

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  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
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    @throws( ... )

  8. val counts: Map[Int, Counts[GenotypeStats.Value]]

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    Counts object to store results

    Counts object to store results

    Attributes
    protected

  9. final def eq(arg0: AnyRef): Boolean

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  10. def equals(arg0: Any): Boolean

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  11. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )

  12. final def getClass(): Class[_]

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  13. def hashCode(): Int

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  14. final def isInstanceOf[T0]: Boolean

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  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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    Definition Classes
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  18. val samples: Map[String, Int]

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    This map binds names to sample index

  19. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
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  20. def toMap: Map[String, Map[GenotypeStats.Value, Long]]

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    Convert to immutable Map

  21. def toString(): String

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  22. final def wait(): Unit

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    @throws( ... )

  23. final def wait(arg0: Long, arg1: Int): Unit

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  24. final def wait(arg0: Long): Unit

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  25. def writeToTsv(file: File): Unit

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    Write results to a file

Inherited from Serializable

Inherited from Serializable

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