nl
.
biopet
.
tools
.
seqstat
SeqStat
Related Doc:
package seqstat
object
SeqStat
extends
MultiToolCommand
Linear Supertypes
MultiToolCommand
,
ToolCommand
[
Args
],
Logging
,
AnyRef
,
Any
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Inherited
SeqStat
MultiToolCommand
ToolCommand
Logging
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Any
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Value Members
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
final
def
##
()
:
Int
Definition Classes
AnyRef → Any
final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
def
aboutText
:
String
Definition Classes
ToolCommand
def
allTools
:
List
[
ToolCommand
[_]]
Definition Classes
MultiToolCommand
def
argsParser
:
ArgsParser
Definition Classes
MultiToolCommand → ToolCommand
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
...
)
def
cmdArrayToArgs
(
args:
Array
[
String
]
)
:
Args
Definition Classes
ToolCommand
def
contactText
:
String
Definition Classes
ToolCommand
def
contributingText
:
String
Definition Classes
ToolCommand
def
descriptionText
:
String
Definition Classes
SeqStat
→ ToolCommand
def
documentationText
:
String
Definition Classes
ToolCommand
def
emptyArgs
:
Args
Definition Classes
MultiToolCommand → ToolCommand
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
def
example
(
args:
String
*
)
:
String
Definition Classes
ToolCommand
def
exampleText
:
String
Definition Classes
SeqStat
→ ToolCommand
def
extendedDescriptionText
:
String
Definition Classes
MultiToolCommand
def
extendedExampleText
:
String
Definition Classes
MultiToolCommand
def
extendedManualText
:
String
Definition Classes
MultiToolCommand
def
extendedUsage
:
Boolean
Definition Classes
SeqStat
→ MultiToolCommand
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
classOf[java.lang.Throwable]
)
def
generateDocumentation
(
outputDirectory:
File
,
version:
String
,
release:
Boolean
)
:
Unit
Definition Classes
ToolCommand
def
generateReadme
(
outputFile:
File
)
:
Unit
Definition Classes
ToolCommand
final
def
getClass
()
:
Class
[_]
Definition Classes
AnyRef → Any
def
hashCode
()
:
Int
Definition Classes
AnyRef → Any
def
installationText
:
String
Definition Classes
ToolCommand
final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
def
logger
:
Logger
Definition Classes
Logging
def
main
(
args:
Array
[
String
]
)
:
Unit
Definition Classes
MultiToolCommand → ToolCommand
def
mainPageContents
:
List
[(
String
,
String
)]
Definition Classes
ToolCommand
def
manualText
:
String
Definition Classes
SeqStat
→ ToolCommand
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
def
printToolList
(
title:
String
,
tools:
List
[
ToolCommand
[_]]
)
:
Unit
Definition Classes
MultiToolCommand
def
printToolList
()
:
Unit
Definition Classes
MultiToolCommand
def
readmeContents
:
List
[(
String
,
String
)]
Definition Classes
ToolCommand
def
singleTool
(
name:
String
)
:
ToolCommand
[_]
Definition Classes
MultiToolCommand
def
sparkExample
(
args:
String
*
)
:
String
Definition Classes
ToolCommand
def
sparkUnsafeExample
(
args:
String
*
)
:
String
Definition Classes
ToolCommand
def
subTools
:
Map
[
String
,
List
[
ToolCommand
[_]]]
Definition Classes
SeqStat
→ MultiToolCommand
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
toString
()
:
String
Definition Classes
AnyRef → Any
def
toolName
:
String
Definition Classes
ToolCommand
def
unsafeExample
(
args:
String
*
)
:
String
Definition Classes
ToolCommand
def
urlToolName
:
String
Definition Classes
ToolCommand
def
usageHeaders
:
List
[
String
]
Attributes
protected
Definition Classes
ToolCommand
def
usageHtmlTable
:
String
Definition Classes
ToolCommand
def
usageRows
(
parser:
OptionParser
[
Args
]
)
:
List
[
List
[
String
]]
Attributes
protected
Definition Classes
ToolCommand
def
usageText
:
String
Definition Classes
MultiToolCommand → ToolCommand
def
validateArgs
(
args:
String
*
)
:
Unit
Definition Classes
MultiToolCommand → ToolCommand
final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
Inherited from
MultiToolCommand
Inherited from
ToolCommand
[
Args
]
Inherited from
Logging
Inherited from
AnyRef
Inherited from
Any
Ungrouped