Class/Object

com.github.heuermh.adam.gfa.sql.gfa1

Gfa1Record

Related Docs: object Gfa1Record | package gfa1

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case class Gfa1Record(recordType: String, id: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], pathName: String, segments: Seq[Reference], overlaps: Option[Seq[String]], ordinal: Option[Int], tags: Map[String, Tag]) extends Product with Serializable

GFA 1.0 record case class for use in data frames.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. Gfa1Record
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
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Instance Constructors

  1. new Gfa1Record(recordType: String, id: String, sequence: String, length: Option[Int], readCount: Option[Int], fragmentCount: Option[Int], kmerCount: Option[Int], sequenceChecksum: String, sequenceUri: String, source: Reference, target: Reference, overlap: String, mappingQuality: Option[Int], mismatchCount: Option[Int], pathName: String, segments: Seq[Reference], overlaps: Option[Seq[String]], ordinal: Option[Int], tags: Map[String, Tag])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  7. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  8. val fragmentCount: Option[Int]

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  9. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  10. val id: String

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  11. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  12. val kmerCount: Option[Int]

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  13. val length: Option[Int]

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  14. val mappingQuality: Option[Int]

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  15. val mismatchCount: Option[Int]

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  16. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  17. final def notify(): Unit

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    Definition Classes
    AnyRef

  18. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  19. val ordinal: Option[Int]

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  20. val overlap: String

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  21. val overlaps: Option[Seq[String]]

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  22. val pathName: String

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  23. val readCount: Option[Int]

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  24. val recordType: String

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  25. val segments: Seq[Reference]

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  26. val sequence: String

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  27. val sequenceChecksum: String

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  28. val sequenceUri: String

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  29. val source: Reference

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  30. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  31. val tags: Map[String, Tag]

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  32. val target: Reference

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  33. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  34. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  35. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped