com
.
github
.
heuermh
.
adam
.
plugins
JavaADAMPlugin
abstract
class
JavaADAMPlugin
[
Input
,
Output
]
extends
ADAMPlugin
[
Input
,
Output
]
Linear Supertypes
ADAMPlugin
[
Input
,
Output
],
AnyRef
,
Any
Known Subclasses
JavaCountAlignments
,
JavaCountAlignmentsPerRead
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JavaADAMPlugin
ADAMPlugin
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Instance Constructors
new
JavaADAMPlugin
(
projection:
Option
[
Schema
]
,
predicate:
Option
[(
Input
) ⇒
AnyRef
]
)
Attributes
protected[
com.github.heuermh.adam.plugins
]
new
JavaADAMPlugin
()
Attributes
protected[
com.github.heuermh.adam.plugins
]
Abstract Value Members
abstract
def
run
(
ac:
JavaADAMContext
,
recs:
JavaRDD
[
Input
]
,
args:
String
)
:
JavaRDD
[
Output
]
Attributes
protected[
com.github.heuermh.adam.plugins
]
Concrete Value Members
final
def
!=
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
Any
final
def
##
()
:
Int
Definition Classes
AnyRef → Any
final
def
==
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
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final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
Any
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
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Annotations
@throws
(
classOf[java.lang.Throwable]
)
final
def
getClass
()
:
Class
[_]
Definition Classes
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def
hashCode
()
:
Int
Definition Classes
AnyRef → Any
final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
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final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
final
def
predicate
()
:
Option
[(
Input
) ⇒
AnyRef
]
Definition Classes
JavaADAMPlugin
→ ADAMPlugin
final
def
projection
()
:
Option
[
Schema
]
Definition Classes
JavaADAMPlugin
→ ADAMPlugin
final
def
run
(
sparkContext:
SparkContext
,
recs:
RDD
[
Input
]
,
args:
String
)
:
RDD
[
Output
]
Definition Classes
JavaADAMPlugin
→ ADAMPlugin
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
toString
()
:
String
Definition Classes
AnyRef → Any
final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
Inherited from
ADAMPlugin
[
Input
,
Output
]
Inherited from
AnyRef
Inherited from
Any
Ungrouped