com.github.heuermh.adam.plugins

JavaCountAlignments

final class JavaCountAlignments extends JavaADAMPlugin[AlignmentRecord, (String, Integer)] with Serializable

Linear Supertypes
Serializable, JavaADAMPlugin[AlignmentRecord, (String, Integer)], ADAMPlugin[AlignmentRecord, (String, Integer)], AnyRef, Any
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Inherited
  1. JavaCountAlignments
  2. Serializable
  3. JavaADAMPlugin
  4. ADAMPlugin
  5. AnyRef
  6. Any
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Instance Constructors

  1. new JavaCountAlignments()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  9. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  12. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  13. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  14. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  15. final def notify(): Unit

    Definition Classes
    AnyRef

  16. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  17. final def predicate(): Option[(AlignmentRecord) ⇒ AnyRef]

    Definition Classes
    JavaADAMPlugin → ADAMPlugin

  18. final def projection(): Option[Schema]

    Definition Classes
    JavaADAMPlugin → ADAMPlugin

  19. def run(ac: JavaADAMContext, recs: JavaRDD[AlignmentRecord], args: String): JavaRDD[(String, Integer)]

    Definition Classes
    JavaCountAlignments → JavaADAMPlugin

  20. final def run(sparkContext: SparkContext, recs: RDD[AlignmentRecord], args: String): RDD[(String, Integer)]

    Definition Classes
    JavaADAMPlugin → ADAMPlugin

  21. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  22. def toString(): String

    Definition Classes
    AnyRef → Any

  23. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  24. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  25. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from JavaADAMPlugin[AlignmentRecord, (String, Integer)]

Inherited from ADAMPlugin[AlignmentRecord, (String, Integer)]

Inherited from AnyRef

Inherited from Any

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