Interface | Description |
---|---|
VariantContextWriter |
this class writes VCF files
|
Class | Description |
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AsyncVariantContextWriter |
AsyncVariantContextWriter that can be wrapped around an underlying AsyncVariantContextWriter to provide asynchronous output.
|
BCF2Encoder |
See #BCFWriter for documentation on this classes role in encoding BCF2 files
|
BCF2FieldEncoder |
See #BCFWriter for documentation on this classes role in encoding BCF2 files
|
BCF2FieldEncoder.AtomicInt |
Specialized int encoder for atomic (non-list) integers
|
BCF2FieldEncoder.Flag | |
BCF2FieldEncoder.Float | |
BCF2FieldEncoder.GenericInts | |
BCF2FieldEncoder.IntArray | |
BCF2FieldEncoder.StringOrCharacter | |
BCF2FieldWriter |
See #BCFWriter for documentation on this classes role in encoding BCF2 files
|
BCF2FieldWriter.FTGenotypesWriter | |
BCF2FieldWriter.GenericSiteWriter | |
BCF2FieldWriter.GenotypesWriter | |
BCF2FieldWriter.GTWriter | |
BCF2FieldWriter.IGFGenotypesWriter | |
BCF2FieldWriter.IntegerTypeGenotypesWriter | |
BCF2FieldWriter.SiteWriter | |
BCF2FieldWriter.StaticallyTypeGenotypesWriter | |
BCF2FieldWriterManager |
See #BCFWriter for documentation on this classes role in encoding BCF2 files
|
IntGenotypeFieldAccessors |
A convenient way to provide a single view on the many int and int[] field values we work with,
for writing out the values.
|
IntGenotypeFieldAccessors.Accessor | |
IntGenotypeFieldAccessors.ADAccessor | |
IntGenotypeFieldAccessors.DPAccessor | |
IntGenotypeFieldAccessors.GQAccessor | |
IntGenotypeFieldAccessors.PLAccessor | |
SortingVariantContextWriter |
this class writes VCF files, allowing records to be passed in unsorted (up to a certain genomic distance away)
|
VariantContextWriterBuilder |
Enum | Description |
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Options |
Available writer options for VariantContextWriters
|
VariantContextWriterBuilder.OutputType |