Interface | Description |
---|---|
ReferenceSequenceFile |
An interface for working with files of reference sequences regardless of the file format
being used.
|
Class | Description |
---|---|
FastaSequenceFile |
Implementation of ReferenceSequenceFile for reading from FASTA files.
|
FastaSequenceIndex |
Reads/writes a fasta index file (.fai), as generated by `samtools faidx`.
|
FastaSequenceIndexCreator |
Static methods to create an
FastaSequenceIndex . |
IndexedFastaSequenceFile |
A fasta file driven by an index for fast, concurrent lookups.
|
ReferenceSequence |
Wrapper around a reference sequence that has been read from a reference file.
|
ReferenceSequenceFileFactory |
Factory class for creating ReferenceSequenceFile instances for reading reference
sequences store in various formats.
|
ReferenceSequenceFileWalker |
Manages a ReferenceSequenceFile.
|