public class DefaultSAMRecordFactory extends java.lang.Object implements SAMRecordFactory
SamReader
classes.Constructor and Description |
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DefaultSAMRecordFactory() |
Modifier and Type | Method and Description |
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BAMRecord |
createBAMRecord(SAMFileHeader header,
int referenceSequenceIndex,
int alignmentStart,
short readNameLength,
short mappingQuality,
int indexingBin,
int cigarLen,
int flags,
int readLen,
int mateReferenceSequenceIndex,
int mateAlignmentStart,
int insertSize,
byte[] variableLengthBlock)
Create a new BAM Record.
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SAMRecord |
createSAMRecord(SAMFileHeader header)
Create a new SAMRecord to be filled in
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static DefaultSAMRecordFactory |
getInstance() |
public static DefaultSAMRecordFactory getInstance()
public SAMRecord createSAMRecord(SAMFileHeader header)
createSAMRecord
in interface SAMRecordFactory
public BAMRecord createBAMRecord(SAMFileHeader header, int referenceSequenceIndex, int alignmentStart, short readNameLength, short mappingQuality, int indexingBin, int cigarLen, int flags, int readLen, int mateReferenceSequenceIndex, int mateAlignmentStart, int insertSize, byte[] variableLengthBlock)
createBAMRecord
in interface SAMRecordFactory