Interface | Description |
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BitInputStream |
An interface to describe the requirements for reading bit data as opposed to bytes.
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BitOutputStream |
An interface to describe the requirements for writing out bits as opposed to bytes.
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Class | Description |
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CountingInputStream |
An input stream that counts the bytes read from it.
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CramArray |
Methods to read and write CRAM array of integers data type.
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CramInt |
Methods to read and write CRAM int values as given in the file format specification.
|
CRC32InputStream |
An input stream that calculates CRC32 of all the bytes passed through it.
|
CRC32OutputStream |
An output stream that calculates CRC32 checksum of all the bytes written through the stream.
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DefaultBitInputStream |
Must not read from delegate unless no bits left in the buffer!!!
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DefaultBitOutputStream | |
ExposedByteArrayOutputStream | |
ExternalCompression |
Methods to provide CRAM external compression/decompression features.
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InputStreamUtils |
Convenience methods to read from
InputStream . |
ITF8 |
Methods to read and write int values as per ITF8 specification in CRAM.
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LTF8 |
Methods to read and write LTF8 as per CRAM specs.
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