Class | Description |
---|---|
AlignmentSpan |
A span of reads on a single reference.
|
Block |
Class representing CRAM block concept and some methods to operate with block content.
|
CompressionHeader | |
Container | |
ContainerIO |
Methods to read and write CRAM containers.
|
CramCompressionRecord | |
CramCompressionRecord.BAM_FLAGS | |
CramHeader |
A starting object when dealing with CRAM files.
|
EncodingParams | |
ReadTag |
CRAM counterpart of
SAMTag . |
Slice |
CRAM slice is a logical union of blocks into for example alignment slices.
|
SubstitutionMatrix |
Enum | Description |
---|---|
BlockCompressionMethod | |
BlockContentType | |
EncodingID |
Encoding ID as defined in the CRAM specs.
|
EncodingKey |