public class WholeGenomeReferenceSequenceMask extends java.lang.Object implements ReferenceSequenceMask
Constructor and Description |
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WholeGenomeReferenceSequenceMask(SAMFileHeader header) |
Modifier and Type | Method and Description |
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boolean |
get(int sequenceIndex,
int position)
It is required that sequenceIndex is >= any previous sequenceIndex passed to this class.
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int |
getMaxPosition() |
int |
getMaxSequenceIndex() |
int |
nextPosition(int sequenceIndex,
int position)
It is required that sequenceIndex is >= any previous sequenceIndex passed to this class.
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public WholeGenomeReferenceSequenceMask(SAMFileHeader header)
public boolean get(int sequenceIndex, int position)
ReferenceSequenceMask
get
in interface ReferenceSequenceMask
public int nextPosition(int sequenceIndex, int position)
ReferenceSequenceMask
nextPosition
in interface ReferenceSequenceMask
public int getMaxSequenceIndex()
getMaxSequenceIndex
in interface ReferenceSequenceMask
public int getMaxPosition()
getMaxPosition
in interface ReferenceSequenceMask