Package htsjdk.beta.io.bundle

Class BundleResourceType

java.lang.Object

htsjdk.beta.io.bundle.BundleResourceType

public class BundleResourceType
extends Object

Namespace for standard constants to specify content type and format for resources contained in a Bundle.

Field Summary

Fields

Modifier and Type	Field	Description
static final String	ALIGNED_READS	Primary content types for use in resource bundles.
static final String	FEATURES
static final String	HAPLOID_REFERENCE
static final String	MD5
static final String	READS_BAM
static final String	READS_CRAM
static final String	READS_HTSGET_BAM
static final String	READS_INDEX	secondary content types names for primary content type ALIGNED_READS resources
static final String	READS_INDEX_BAI	file format names for secondary content type READS_INDEX resources
static final String	READS_INDEX_CRAI
static final String	READS_INDEX_CSI
static final String	READS_SAM	file format names for content type ALIGNED_READS
static final String	REFERENCE_DICTIONARY	secondary content type names for HAPLOID_REFERENCE resources
static final String	REFERENCE_INDEX
static final String	VARIANT_CONTEXTS
static final String	VARIANTS_INDEX	secondary content types names for primary content type VARIANT_CONTEXTS resources
static final String	VARIANTS_VCF	file format names for content type VARIANT_CONTEXTS

Constructor Summary

Constructors

Constructor	Description
BundleResourceType()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

ALIGNED_READS

public static final String ALIGNED_READS

Primary content types for use in resource bundles. These names are aligned with enum values in HtsContentType, since each one represents the name of the primary resource required by HtsCodecs for that HtsContentType.

HAPLOID_REFERENCE

public static final String HAPLOID_REFERENCE

VARIANT_CONTEXTS

public static final String VARIANT_CONTEXTS

FEATURES

public static final String FEATURES

READS_SAM

public static final String READS_SAM

file format names for content type ALIGNED_READS

See Also:

• Constant Field Values

READS_BAM

public static final String READS_BAM

See Also:

• Constant Field Values

READS_CRAM

public static final String READS_CRAM

See Also:

• Constant Field Values

READS_HTSGET_BAM

public static final String READS_HTSGET_BAM

See Also:

• Constant Field Values

READS_INDEX

public static final String READS_INDEX

secondary content types names for primary content type ALIGNED_READS resources

See Also:

• Constant Field Values

READS_INDEX_BAI

public static final String READS_INDEX_BAI

file format names for secondary content type READS_INDEX resources

See Also:

• Constant Field Values

READS_INDEX_CRAI

public static final String READS_INDEX_CRAI

See Also:

• Constant Field Values

READS_INDEX_CSI

public static final String READS_INDEX_CSI

See Also:

• Constant Field Values

VARIANTS_INDEX

public static final String VARIANTS_INDEX

secondary content types names for primary content type VARIANT_CONTEXTS resources

See Also:

• Constant Field Values

VARIANTS_VCF

public static final String VARIANTS_VCF

file format names for content type VARIANT_CONTEXTS

See Also:

• Constant Field Values

REFERENCE_DICTIONARY

public static final String REFERENCE_DICTIONARY

secondary content type names for HAPLOID_REFERENCE resources

See Also:

• Constant Field Values

REFERENCE_INDEX

public static final String REFERENCE_INDEX

See Also:

• Constant Field Values

MD5

public static final String MD5

See Also:

• Constant Field Values

Constructor Details

BundleResourceType

public BundleResourceType()