Package htsjdk.variant.bcf2

package htsjdk.variant.bcf2

Class	Description
BCF2Codec	Decode BCF2 files
BCF2Codec.LazyData
BCF2Codec.SitesInfoForDecoding
BCF2Decoder
BCF2GenotypeFieldDecoders	An efficient scheme for building and obtaining specialized genotype field decoders.
BCF2GenotypeFieldDecoders.Decoder	Decoder a field (implicit from creation) encoded as typeDescriptor in the decoder object in the GenotypeBuilders one for each sample in order.
BCF2LazyGenotypesDecoder	Lazy version of genotypes decoder for BCF2 genotypes
BCF2Type	BCF2 types and associated information
BCF2Utils	Common utilities for working with BCF2 files Includes convenience methods for encoding, decoding BCF2 type descriptors (size + type)
BCFVersion	Simple holder for BCF version information User: depristo Date: 8/2/12 Time: 2:16 PM