Hierarchy For Package htsjdk.beta.plugin.hapref

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • htsjdk.beta.plugin.hapref.HaploidReferenceDecoderOptions (implements htsjdk.beta.plugin.HtsDecoderOptions)
  • htsjdk.beta.plugin.hapref.HaploidReferenceEncoderOptions (implements htsjdk.beta.plugin.HtsEncoderOptions)
  • htsjdk.beta.plugin.hapref.HaploidReferenceFormats
  • htsjdk.beta.plugin.hapref.HapRefDecoderOptions (implements htsjdk.beta.plugin.HtsDecoderOptions)

Interface Hierarchy

• java.lang.AutoCloseable
  • java.io.Closeable
    • htsjdk.beta.plugin.HtsDecoder<H,R> (also extends htsjdk.beta.plugin.interval.HtsQuery<RECORD>)
      • htsjdk.beta.plugin.hapref.HaploidReferenceDecoder
    • htsjdk.beta.plugin.HtsEncoder<H,R>
      • htsjdk.beta.plugin.hapref.HaploidReferenceEncoder
• java.lang.Iterable<T>
  • htsjdk.beta.plugin.interval.HtsQuery<RECORD>
    • htsjdk.beta.plugin.HtsDecoder<H,R> (also extends java.io.Closeable)
      • htsjdk.beta.plugin.hapref.HaploidReferenceDecoder
• htsjdk.beta.plugin.Upgradeable
  • htsjdk.beta.plugin.HtsCodec<D,E>
    • htsjdk.beta.plugin.hapref.HaploidReferenceCodec