Package htsjdk.beta.plugin.interval

Interface HtsInterval

All Known Implementing Classes:
HtsQueryInterval
public interface HtsInterval
A common interface for 1-based, closed genomic intervals. This is an evolution of Locatable that can be used to support long genomic coordinates.

  • Method Summary

    Modifier and Type
    Method
    Description
    long
    getEnd()
    Get the inclusive end coordinate for this interval.
    String
    getQueryName()
    Get the name part of this interval query.
    long
    getStart()
    Get the 1-based inclusive start coordinate for this interval.

  • Method Details

    • getQueryName

      String getQueryName()
      Get the name part of this interval query.
      Returns:
      the name part of this interval query

    • getStart

      long getStart()
      Get the 1-based inclusive start coordinate for this interval.
      Returns:
      the 1-based inclusive start coordinate for this interval

    • getEnd

      long getEnd()
      Get the inclusive end coordinate for this interval.
      Returns:
      the inclusive end coordinate for this interval