Package htsjdk.samtools.cram.encoding.readfeatures

Class BaseQualityScore

java.lang.Object
htsjdk.samtools.cram.encoding.readfeatures.BaseQualityScore
All Implemented Interfaces:
ReadFeature, Serializable
public final class BaseQualityScore extends Object implements Serializable, ReadFeature
A read feature representing a single quality score in a read.
See Also:

  • Field Details

  • Constructor Details

    • BaseQualityScore

      public BaseQualityScore(int position, byte qualityScore)

  • Method Details

    • getOperator

      public byte getOperator()
      Description copied from interface: ReadFeature
      Read features are distinguished by operator, similar to cigar operator.
      Specified by:
      getOperator in interface ReadFeature
      Returns:
      type of the read feature

    • getPosition

      public int getPosition()
      Specified by:
      getPosition in interface ReadFeature
      Returns:
      zero-based position in the read

    • getQualityScore

      public byte getQualityScore()

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • equals

      public boolean equals(Object o)
      Overrides:
      equals in class Object

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object