Package htsjdk.samtools.cram.io

Class DefaultBitInputStream

java.lang.Object

java.io.InputStream

java.io.FilterInputStream

java.io.DataInputStream

htsjdk.samtools.cram.io.DefaultBitInputStream

All Implemented Interfaces:

BitInputStream, Closeable, DataInput, AutoCloseable

public class DefaultBitInputStream
extends DataInputStream
implements BitInputStream

Must not read from delegate unless no bits left in the buffer!!!

Field Summary

Fields inherited from class java.io.FilterInputStream

in

Constructor Summary

Constructors

Constructor	Description
DefaultBitInputStream(InputStream in)

Method Summary

Modifier and Type	Method	Description
final boolean	readBit()	Reads a single bit from the stream.
final int	readBits(int n)	Read specified number of bits from the stream.
final long	readLongBits(int n)	Read specified number of bits from the stream.
void	reset()

Methods inherited from class java.io.DataInputStream

read, read, readBoolean, readByte, readChar, readDouble, readFloat, readFully, readFully, readInt, readLine, readLong, readShort, readUnsignedByte, readUnsignedShort, readUTF, readUTF, skipBytes

Methods inherited from class java.io.FilterInputStream

available, close, mark, markSupported, read, skip

Methods inherited from class java.io.InputStream

nullInputStream, readAllBytes, readNBytes, readNBytes, skipNBytes, transferTo

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.io.Closeable

close

Constructor Details

DefaultBitInputStream

public DefaultBitInputStream(InputStream in)

Method Details

readBit

public final boolean readBit()

Description copied from interface: BitInputStream

Reads a single bit from the stream.

Specified by:

readBit in interface BitInputStream

readBits

public final int readBits(int n)

Description copied from interface: BitInputStream

Read specified number of bits from the stream. The bits are return in an integer value.

Specified by:

readBits in interface BitInputStream

Parameters:

n - number of bits to read

readLongBits

public final long readLongBits(int n)

Description copied from interface: BitInputStream

Read specified number of bits from the stream. The bits are return in a long value.

Specified by:

readLongBits in interface BitInputStream

Parameters:

n - number of bits to read

reset

public void reset()

Overrides:

reset in class FilterInputStream