Package htsjdk.samtools.fastq

Class BasicFastqWriter

java.lang.Object

htsjdk.samtools.fastq.BasicFastqWriter

All Implemented Interfaces:

Writer<FastqRecord>, FastqWriter, Closeable, Flushable, AutoCloseable

public class BasicFastqWriter
extends Object
implements FastqWriter, Flushable

In general FastqWriterFactory should be used so that AsyncFastqWriter can be enabled, but there are some cases in which that behavior is explicitly not wanted.

Constructor Summary

Constructors

Constructor	Description
BasicFastqWriter(File file)
BasicFastqWriter(File file, boolean createMd5)
BasicFastqWriter(PrintStream writer)

Method Summary

Modifier and Type	Method	Description
void	close()
void	flush()
void	write(FastqRecord rec)	Writes one item.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.io.Writer

write

Constructor Details

BasicFastqWriter

public BasicFastqWriter(File file)

BasicFastqWriter

public BasicFastqWriter(File file,
 boolean createMd5)

BasicFastqWriter

public BasicFastqWriter(PrintStream writer)

Method Details

write

public void write(FastqRecord rec)

Description copied from interface: Writer

Writes one item.

Specified by:

write in interface FastqWriter

Specified by:

write in interface Writer<FastqRecord>

Parameters:

rec - the item to write.

flush

public void flush()

Specified by:

flush in interface Flushable

close

public void close()

Specified by:

close in interface AutoCloseable

Specified by:

close in interface Closeable

Specified by:

close in interface FastqWriter