Class Hierarchy
- java.lang.Object
- htsjdk.samtools.reference.BlockCompressedIndexedFastaSequenceFile
- htsjdk.samtools.reference.FastaReferenceWriter (implements java.lang.AutoCloseable)
- htsjdk.samtools.reference.FastaReferenceWriterBuilder
- htsjdk.samtools.reference.FastaSequenceFile
- htsjdk.samtools.reference.FastaSequenceIndex (implements java.lang.Iterable<T>)
- htsjdk.samtools.reference.FastaSequenceIndexCreator
- htsjdk.samtools.reference.FastaSequenceIndexEntry
- htsjdk.samtools.reference.IndexedFastaSequenceFile
- htsjdk.samtools.util.IterableOnceIterator<T> (implements java.io.Closeable, java.lang.Iterable<T>, java.util.Iterator<E>)
- htsjdk.samtools.reference.SamLocusAndReferenceIterator
- htsjdk.samtools.reference.ReferenceSequence (implements htsjdk.beta.plugin.HtsRecord)
- htsjdk.samtools.reference.ReferenceSequenceFileFactory
- htsjdk.samtools.reference.ReferenceSequenceFileWalker (implements java.io.Closeable)
- htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference
Interface Hierarchy
- java.lang.AutoCloseable
- java.io.Closeable
- htsjdk.samtools.reference.ReferenceSequenceFile
- java.io.Closeable