Package htsjdk.samtools.util

Class Md5CalculatingOutputStream

java.lang.Object

java.io.OutputStream

htsjdk.samtools.util.Md5CalculatingOutputStream

All Implemented Interfaces:

Closeable, Flushable, AutoCloseable

public class Md5CalculatingOutputStream
extends OutputStream

Class to generate an MD5 string for a file as it is being read

Constructor Summary

Constructors

Constructor	Description
Md5CalculatingOutputStream(OutputStream os, File digestFile)
Md5CalculatingOutputStream(OutputStream os, Path digestFile)	Constructor that takes in the OutputStream that we are wrapping and creates the MD5 MessageDigest

Method Summary

Modifier and Type	Method	Description
void	close()
void	flush()
String	md5()
void	write(byte[] b)
void	write(byte[] b, int off, int len)
void	write(int b)

Methods inherited from class java.io.OutputStream

nullOutputStream

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Md5CalculatingOutputStream

public Md5CalculatingOutputStream(OutputStream os,
 Path digestFile)

Constructor that takes in the OutputStream that we are wrapping and creates the MD5 MessageDigest

Md5CalculatingOutputStream

public Md5CalculatingOutputStream(OutputStream os,
 File digestFile)

Method Details

write

public void write(int b)
           throws IOException

Specified by:

write in class OutputStream

Throws:

IOException

write

public void write(byte[] b)
           throws IOException

Overrides:

write in class OutputStream

Throws:

IOException

write

public void write(byte[] b,
 int off,
 int len)
           throws IOException

Overrides:

write in class OutputStream

Throws:

IOException

md5

public String md5()

close

public void close()
           throws IOException

Specified by:

close in interface AutoCloseable

Specified by:

close in interface Closeable

Overrides:

close in class OutputStream

Throws:

IOException

flush

public void flush()
           throws IOException

Specified by:

flush in interface Flushable

Overrides:

flush in class OutputStream

Throws:

IOException