Package htsjdk.tribble

Class Tribble

java.lang.Object

htsjdk.tribble.Tribble

public class Tribble
extends Object

Common, tribble wide constants and static functions

Field Summary

Fields

Modifier and Type	Field	Description
static final String	STANDARD_INDEX_EXTENSION	Deprecated. since June 2019 Use FileExtensions.TRIBBLE_INDEX instead.

Method Summary

Modifier and Type	Method	Description
static File	indexFile(File file)	Return the File of the index file for the provided file Does not actually create an index
static String	indexFile(String filename)	Return the name of the index file for the provided filename Does not actually create an index
static Path	indexPath(Path path)	Return the name of the index file for the provided path Does not actually create an index
static File	tabixIndexFile(File file)	Return the File of the tabix index file for the provided file Does not actually create an index
static String	tabixIndexFile(String filename)	Return the name of the tabix index file for the provided filename Does not actually create an index
static Path	tabixIndexPath(Path path)	Return the name of the tabix index file for the provided path Does not actually create an index

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

STANDARD_INDEX_EXTENSION

@Deprecated
public static final String STANDARD_INDEX_EXTENSION

Deprecated.

since June 2019 Use FileExtensions.TRIBBLE_INDEX instead.

See Also:

• Constant Field Values

Method Details

indexFile

public static String indexFile(String filename)

Return the name of the index file for the provided filename Does not actually create an index

Parameters:

filename - name of the file

Returns:

non-null String representing the index filename

indexFile

public static File indexFile(File file)

Return the File of the index file for the provided file Does not actually create an index

Parameters:

file - the file

Returns:

a non-null File representing the index

indexPath

public static Path indexPath(Path path)

Return the name of the index file for the provided path Does not actually create an index

Parameters:

path - the path

Returns:

Path representing the index filename

tabixIndexFile

public static String tabixIndexFile(String filename)

Return the name of the tabix index file for the provided filename Does not actually create an index

Parameters:

filename - name of the file

Returns:

non-null String representing the index filename

tabixIndexFile

public static File tabixIndexFile(File file)

Return the File of the tabix index file for the provided file Does not actually create an index

Parameters:

file - the file

Returns:

a non-null File representing the index

tabixIndexPath

public static Path tabixIndexPath(Path path)

Return the name of the tabix index file for the provided path Does not actually create an index

Parameters:

path - the path

Returns:

Path representing the index filename