Package htsjdk.tribble.bed
Class FullBEDFeature.Exon
java.lang.Object
htsjdk.tribble.bed.FullBEDFeature.Exon
- Enclosing class:
- FullBEDFeature
A sub region of a feature. For example, a Gene exon
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Constructor Summary
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Method Summary
Modifier and TypeMethodDescriptionint
getCdEnd()
Method descriptionint
Method descriptionint
Method descriptionint
getValueString
(double position) void
setCodingEnd
(int codingEnd) Method descriptionvoid
setCodingStart
(int codingStart) Method descriptionvoid
setMrnaBase
(int base) void
setNumber
(int number) void
setPhase
(int phase) Method descriptionvoid
setReadingFrame
(int offset) Method descriptionvoid
setUTR
(boolean utr) Flag indicating that the entire exon is the UTR.
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Constructor Details
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Exon
public Exon(int start, int end) Constructs ...- Parameters:
start
-end
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Method Details
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setMrnaBase
public void setMrnaBase(int base) -
setUTR
public void setUTR(boolean utr) Flag indicating that the entire exon is the UTR.- Parameters:
utr
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setCodingStart
public void setCodingStart(int codingStart) Method description- Parameters:
codingStart
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setCodingEnd
public void setCodingEnd(int codingEnd) Method description- Parameters:
codingEnd
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setReadingFrame
public void setReadingFrame(int offset) Method description- Parameters:
offset
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setPhase
public void setPhase(int phase) Method description- Parameters:
phase
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getCdStart
public int getCdStart()Method description- Returns:
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getCdEnd
public int getCdEnd()Method description- Returns:
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getCodingLength
public int getCodingLength()Method description- Returns:
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getValueString
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getNumber
public int getNumber() -
setNumber
public void setNumber(int number)
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