Package htsjdk.tribble.index

Interface ChrIndex

All Known Implementing Classes:

IntervalTreeIndex.ChrIndex, LinearIndex.ChrIndex

public interface ChrIndex

Represents an index on a specific chromosome

Method Summary

Modifier and Type	Method	Description
List<Block>	getBlocks()
List<Block>	getBlocks(int start, int end)
String	getName()
void	read(LittleEndianInputStream dis)
void	write(LittleEndianOutputStream dos)

Method Details

getName

String getName()

getBlocks

List<Block> getBlocks()

Returns:

all blocks in ChrIndex

getBlocks

List<Block> getBlocks(int start,
 int end)

Parameters:

start - the start position, one based

end - the end position, one based

Returns:

a list of blocks that include the region defined from start to stop. Can never return null

write

void write(LittleEndianOutputStream dos)
    throws IOException

Throws:

IOException

read

void read(LittleEndianInputStream dis)
   throws IOException

Throws:

IOException