Package htsjdk.variant.vcf

Class VCFPassThruTextTransformer

java.lang.Object

htsjdk.variant.vcf.VCFPassThruTextTransformer

All Implemented Interfaces:

VCFTextTransformer

public class VCFPassThruTextTransformer
extends Object
implements VCFTextTransformer

A no-op implementation of VCFTextTransformer for pre-v43 VCFs, when such encodings are not supported and no transformation need be done.

Constructor Summary

Constructors

Constructor	Description
VCFPassThruTextTransformer()

Method Summary

Modifier and Type	Method	Description
String	decodeText(String rawPart)	No-op decoder for a single string
List<String>	decodeText(List<String> rawParts)	No-op decoder for lists of strings

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

VCFPassThruTextTransformer

public VCFPassThruTextTransformer()

Method Details

decodeText

public String decodeText(String rawPart)

No-op decoder for a single string

Specified by:

decodeText in interface VCFTextTransformer

Parameters:

rawPart - the raw string to be decoded

Returns:

the raw string with no transformation done

decodeText

public List<String> decodeText(List<String> rawParts)

No-op decoder for lists of strings

Specified by:

decodeText in interface VCFTextTransformer

Parameters:

rawParts - a list of raw strings

Returns:

the list of raw strings with no transformations done