Package htsjdk.tribble.index

Class TribbleIndexCreator

java.lang.Object

htsjdk.tribble.index.TribbleIndexCreator

All Implemented Interfaces:

IndexCreator

Direct Known Subclasses:

DynamicIndexCreator, IntervalIndexCreator, LinearIndexCreator

public abstract class TribbleIndexCreator
extends Object
implements IndexCreator

Base class for Tribble-specific index creators.

Field Summary

Fields

Modifier and Type	Field	Description
protected LinkedHashMap<String,String>	properties

Constructor Summary

Constructors

Constructor	Description
TribbleIndexCreator()

Method Summary

Modifier and Type	Method	Description
void	addProperty(String key, String value)
void	setIndexSequenceDictionary(SAMSequenceDictionary dict)	Set the sequence dictionary entries for the index property list.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.tribble.index.IndexCreator

addFeature, finalizeIndex

Field Details

properties

protected LinkedHashMap<String,String> properties

Constructor Details

TribbleIndexCreator

public TribbleIndexCreator()

Method Details

addProperty

public void addProperty(String key,
 String value)

setIndexSequenceDictionary

public void setIndexSequenceDictionary(SAMSequenceDictionary dict)

Set the sequence dictionary entries for the index property list.

Specified by:

setIndexSequenceDictionary in interface IndexCreator

Parameters:

dict - the dictionary to add to the index.