com
.
github
.
vickumar1981
.
stringdistance
SmithWatermanImplWrapper
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package stringdistance
class
SmithWatermanImplWrapper
extends
SmithWatermanImpl
Jave Wrapper for smith waterman similarity.
Linear Supertypes
SmithWatermanImpl
,
GapSubstitution
,
AnyRef
,
Any
Known Subclasses
SmithWatermanImpl
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SmithWatermanImplWrapper
SmithWatermanImpl
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Instance Constructors
new
SmithWatermanImplWrapper
()
Value Members
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
final
def
##
()
:
Int
Definition Classes
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final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
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final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
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Annotations
@throws
(
...
)
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
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def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
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def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
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Annotations
@throws
(
classOf[java.lang.Throwable]
)
final
def
getClass
()
:
Class
[_]
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def
hashCode
()
:
Int
Definition Classes
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final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
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final
def
notify
()
:
Unit
Definition Classes
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final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
def
smithWaterman
(
s1:
String
,
s2:
String
,
gap:
Gap
=
LinearGap()
,
windowSize:
Int
=
Integer.MAX_VALUE
)
:
Double
Definition Classes
SmithWatermanImpl
def
smithWatermanGotoh
(
s1:
String
,
s2:
String
,
gap:
ConstantGap
=
ConstantGap()
)
:
Double
Definition Classes
SmithWatermanImpl
def
subst
(
a:
String
,
aIndex:
Int
,
b:
String
,
bIndex:
Int
,
gap:
Gap
)
:
Double
Attributes
protected
Definition Classes
GapSubstitution
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
toString
()
:
String
Definition Classes
AnyRef → Any
final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
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Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
Inherited from
SmithWatermanImpl
Inherited from
GapSubstitution
Inherited from
AnyRef
Inherited from
Any
Ungrouped
Jave Wrapper for smith waterman similarity.