Object

com.github.vickumar1981.stringdistance.ArrayDistance

SmithWatermanGotoh

Related Doc: package ArrayDistance

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object SmithWatermanGotoh extends WeightedScoreMetric[ConstantGap] with SmithWatermanImpl

Linear Supertypes
SmithWatermanImpl, GapSubstitution, WeightedScoreMetric[ConstantGap], AnyRef, Any
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Inherited
  1. SmithWatermanGotoh
  2. SmithWatermanImpl
  3. GapSubstitution
  4. WeightedScoreMetric
  5. AnyRef
  6. Any
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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  7. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  8. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  9. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  10. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  11. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  12. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  13. final def notify(): Unit

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    Definition Classes
    AnyRef

  14. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  15. def score[T1](arr1: Array[T1], arr2: Array[T1], weight: ConstantGap): Double

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    Definition Classes
    SmithWatermanGotoh → WeightedScoreMetric

  16. def score[T1](arr1: Array[T1], arr2: Array[T1]): Double

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    Definition Classes
    SmithWatermanGotoh → WeightedScoreMetric

  17. def smithWaterman[T](s1: Array[T], s2: Array[T], gap: Gap = LinearGap(), windowSize: Int = Integer.MAX_VALUE): Double

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    Definition Classes
    SmithWatermanImpl

  18. def smithWatermanGotoh[T](s1: Array[T], s2: Array[T], gap: ConstantGap = ConstantGap()): Double

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    Definition Classes
    SmithWatermanImpl

  19. def subst[T](a: Array[T], aIndex: Int, b: Array[T], bIndex: Int, gap: Gap): Double

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    Attributes
    protected
    Definition Classes
    GapSubstitution

  20. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  21. def toString(): String

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    Definition Classes
    AnyRef → Any

  22. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  23. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  24. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from SmithWatermanImpl

Inherited from GapSubstitution

Inherited from WeightedScoreMetric[ConstantGap]

Inherited from AnyRef

Inherited from Any

Ungrouped