Index

A B C D E F G H I J K L M N O P R S T U V W Y
All Classes All Packages

A

AddColumnFillProcessor<T> - Class in com.lumiomedical.etl.dataframe.processor.column

AddColumnFillProcessor(ColumnDescriptor<T, ?>, String, Function<Row, T>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.AddColumnFillProcessor

AddColumnFillProcessor(ColumnDescriptor<T, ?>, String, Supplier<T>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.AddColumnFillProcessor

addColumnIfNotExists(Table, String, ColumnDescriptor<T, C>) - Static method in class com.lumiomedical.etl.dataframe.Tables

Adds a column of a given type if it doesn't already exist in the provided table.

AddColumnProcessor - Class in com.lumiomedical.etl.dataframe.processor.column

Adds an arbitrary number of columns of a given type to a given table.

AddColumnProcessor(ColumnDescriptor, String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.AddColumnProcessor

AddColumnProcessor(ColumnDescriptor, Collection<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.AddColumnProcessor

AddColumnRowIndexProcessor - Class in com.lumiomedical.etl.dataframe.processor.column

Adds a row index column

AddColumnRowIndexProcessor() - Constructor for class com.lumiomedical.etl.dataframe.processor.column.AddColumnRowIndexProcessor

AddColumnRowIndexPropertiesProcessor - Class in com.lumiomedical.etl.dataframe.processor.column

Adds a row index column

AddColumnRowIndexPropertiesProcessor(TableProperties) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.AddColumnRowIndexPropertiesProcessor

addProcessor(TableProcessor) - Method in class com.lumiomedical.etl.dataframe.processor.CompositeProcessor

aggregate(Loader<I>) - Static method in class com.lumiomedical.etl.loader.Loaders

An adapter function for leveraging a given Loader over a collection of its inputs.

aggregate(BiTransformer<I1, I2, O>) - Static method in class com.lumiomedical.etl.transformer.Transformers

An adapter function for leveraging a given BiTransformer over a collection of its inputs.

aggregate(Transformer<I, O>) - Static method in class com.lumiomedical.etl.transformer.Transformers

An adapter function for leveraging a given Transformer over a collection of its inputs.

AggregateFunctions - Class in com.lumiomedical.etl.dataframe.aggregate

AmazonS3ListKeys - Class in com.lumiomedical.etl.extractor.aws

AmazonS3ListKeys(AmazonS3, String) - Constructor for class com.lumiomedical.etl.extractor.aws.AmazonS3ListKeys

AmazonS3Streamer - Class in com.lumiomedical.etl.extractor.aws

AmazonS3Streamer(AmazonS3, String, String) - Constructor for class com.lumiomedical.etl.extractor.aws.AmazonS3Streamer

asURL(String) - Static method in class com.lumiomedical.etl.transformer.http.HttpTransformers

B

BasicHttpQuery - Class in com.lumiomedical.etl.transformer.http

BasicHttpQuery() - Constructor for class com.lumiomedical.etl.transformer.http.BasicHttpQuery

BasicHttpQuery(HttpClient) - Constructor for class com.lumiomedical.etl.transformer.http.BasicHttpQuery

BasicHttpStreamer - Class in com.lumiomedical.etl.extractor.http

BasicHttpStreamer(HttpClient, HttpRequest) - Constructor for class com.lumiomedical.etl.extractor.http.BasicHttpStreamer

BasicHttpStreamer(HttpRequest) - Constructor for class com.lumiomedical.etl.extractor.http.BasicHttpStreamer

BasicSentenceSplitter - Class in com.lumiomedical.etl.transformer.text

BasicSentenceSplitter(Locale) - Constructor for class com.lumiomedical.etl.transformer.text.BasicSentenceSplitter

BasicSentenceTokenizer - Class in com.lumiomedical.etl.transformer.text

BasicSentenceTokenizer() - Constructor for class com.lumiomedical.etl.transformer.text.BasicSentenceTokenizer

BasicTokenFrequency<C extends Collection<String>> - Class in com.lumiomedical.etl.transformer.text

BasicTokenFrequency() - Constructor for class com.lumiomedical.etl.transformer.text.BasicTokenFrequency

BasicTokenMapping<CI extends Collection<String>,CO extends Collection<String>> - Class in com.lumiomedical.etl.transformer.text

BasicTokenMapping(Function<String, String>, Collector<String, ?, CO>) - Constructor for class com.lumiomedical.etl.transformer.text.BasicTokenMapping

BatchReaderGenerator - Class in com.lumiomedical.etl.generator

BatchReaderGenerator(InputStream, int) - Constructor for class com.lumiomedical.etl.generator.BatchReaderGenerator

BOOLEAN - com.lumiomedical.etl.dataframe.column.ColumnTypes

BOOLEAN - Static variable in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

bucket - Variable in class com.lumiomedical.etl.utility.aws.S3.DownloadTarget

BufferizeInputStream - Class in com.lumiomedical.etl.transformer.iostream

BufferizeInputStream() - Constructor for class com.lumiomedical.etl.transformer.iostream.BufferizeInputStream

buildS3(String) - Static method in class com.lumiomedical.etl.utility.aws.S3

buildS3(String, String, String) - Static method in class com.lumiomedical.etl.utility.aws.S3

buildS3(Properties) - Static method in class com.lumiomedical.etl.utility.aws.S3

C

CloneColumnProcessor - Class in com.lumiomedical.etl.dataframe.processor.column

Adds a copy of a given column to a given table.

CloneColumnProcessor(String, String) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.CloneColumnProcessor

ColumnDescriptor<T,C extends tech.tablesaw.columns.Column<T>> - Class in com.lumiomedical.etl.dataframe.descriptor

This class is expected to simplify the signature of other classes interacting with tablesaw Columns and Rows by providing a centralized "repository" of references to Column-related methods.

ColumnProperties - Class in com.lumiomedical.etl.dataframe.configuration

ColumnProperties(ColumnType, String, int, Integer) - Constructor for class com.lumiomedical.etl.dataframe.configuration.ColumnProperties

ColumnTypes - Enum in com.lumiomedical.etl.dataframe.column

com.lumiomedical.etl - package com.lumiomedical.etl

com.lumiomedical.etl.dataframe - package com.lumiomedical.etl.dataframe

com.lumiomedical.etl.dataframe.aggregate - package com.lumiomedical.etl.dataframe.aggregate

com.lumiomedical.etl.dataframe.column - package com.lumiomedical.etl.dataframe.column

com.lumiomedical.etl.dataframe.configuration - package com.lumiomedical.etl.dataframe.configuration

com.lumiomedical.etl.dataframe.configuration.loader - package com.lumiomedical.etl.dataframe.configuration.loader

com.lumiomedical.etl.dataframe.configuration.loader.file - package com.lumiomedical.etl.dataframe.configuration.loader.file

com.lumiomedical.etl.dataframe.configuration.loader.iostream - package com.lumiomedical.etl.dataframe.configuration.loader.iostream

com.lumiomedical.etl.dataframe.configuration.loader.json - package com.lumiomedical.etl.dataframe.configuration.loader.json

com.lumiomedical.etl.dataframe.configuration.loader.resource - package com.lumiomedical.etl.dataframe.configuration.loader.resource

com.lumiomedical.etl.dataframe.descriptor - package com.lumiomedical.etl.dataframe.descriptor

com.lumiomedical.etl.dataframe.processor - package com.lumiomedical.etl.dataframe.processor

com.lumiomedical.etl.dataframe.processor.column - package com.lumiomedical.etl.dataframe.processor.column

com.lumiomedical.etl.dataframe.processor.date - package com.lumiomedical.etl.dataframe.processor.date

com.lumiomedical.etl.dataframe.processor.print - package com.lumiomedical.etl.dataframe.processor.print

com.lumiomedical.etl.dataframe.processor.row - package com.lumiomedical.etl.dataframe.processor.row

com.lumiomedical.etl.dataframe.processor.string - package com.lumiomedical.etl.dataframe.processor.string

com.lumiomedical.etl.extractor - package com.lumiomedical.etl.extractor

com.lumiomedical.etl.extractor.aws - package com.lumiomedical.etl.extractor.aws

com.lumiomedical.etl.extractor.filesystem - package com.lumiomedical.etl.extractor.filesystem

com.lumiomedical.etl.extractor.ftp - package com.lumiomedical.etl.extractor.ftp

com.lumiomedical.etl.extractor.http - package com.lumiomedical.etl.extractor.http

com.lumiomedical.etl.generator - package com.lumiomedical.etl.generator

com.lumiomedical.etl.loader - package com.lumiomedical.etl.loader

com.lumiomedical.etl.loader.file - package com.lumiomedical.etl.loader.file

com.lumiomedical.etl.loader.tablesaw - package com.lumiomedical.etl.loader.tablesaw

com.lumiomedical.etl.loader.zip - package com.lumiomedical.etl.loader.zip

com.lumiomedical.etl.logging - package com.lumiomedical.etl.logging

com.lumiomedical.etl.transformer - package com.lumiomedical.etl.transformer

com.lumiomedical.etl.transformer.archive - package com.lumiomedical.etl.transformer.archive

com.lumiomedical.etl.transformer.filesystem - package com.lumiomedical.etl.transformer.filesystem

com.lumiomedical.etl.transformer.http - package com.lumiomedical.etl.transformer.http

com.lumiomedical.etl.transformer.iostream - package com.lumiomedical.etl.transformer.iostream

com.lumiomedical.etl.transformer.json - package com.lumiomedical.etl.transformer.json

com.lumiomedical.etl.transformer.jsoup - package com.lumiomedical.etl.transformer.jsoup

com.lumiomedical.etl.transformer.tablesaw - package com.lumiomedical.etl.transformer.tablesaw

com.lumiomedical.etl.transformer.text - package com.lumiomedical.etl.transformer.text

com.lumiomedical.etl.transformer.yaml - package com.lumiomedical.etl.transformer.yaml

com.lumiomedical.etl.utility.aws - package com.lumiomedical.etl.utility.aws

com.lumiomedical.etl.vault - package com.lumiomedical.etl.vault

compile() - Method in class com.lumiomedical.etl.ETL

CompileColumnsToJSONProcessor - Class in com.lumiomedical.etl.dataframe.processor.column

This transformer will turn a series of column into a single JSON object stored in a new column.

CompileColumnsToJSONProcessor(String, boolean, String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.CompileColumnsToJSONProcessor

CompileColumnsToJSONProcessor(String, boolean, Collection<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.CompileColumnsToJSONProcessor

CompileColumnsToJSONProcessor(String, String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.CompileColumnsToJSONProcessor

CompileColumnsToJSONProcessor(String, Collection<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.CompileColumnsToJSONProcessor

CompositeProcessor - Class in com.lumiomedical.etl.dataframe.processor

CompositeProcessor(TableProcessor...) - Constructor for class com.lumiomedical.etl.dataframe.processor.CompositeProcessor

createColumn(String, int) - Method in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

CreateDirectory<I> - Class in com.lumiomedical.etl.transformer.filesystem

CreateDirectory(String) - Constructor for class com.lumiomedical.etl.transformer.filesystem.CreateDirectory

CreateDirectory(Path) - Constructor for class com.lumiomedical.etl.transformer.filesystem.CreateDirectory

CreateDirectory(Function<I, Path>) - Constructor for class com.lumiomedical.etl.transformer.filesystem.CreateDirectory

Criterion() - Constructor for class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

D

DOUBLE - com.lumiomedical.etl.dataframe.column.ColumnTypes

DOUBLE - Static variable in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

download(AmazonS3, S3.DownloadTarget) - Static method in class com.lumiomedical.etl.utility.aws.S3

download(AmazonS3, String, String, String) - Static method in class com.lumiomedical.etl.utility.aws.S3

DownloadTarget(String, String) - Constructor for class com.lumiomedical.etl.utility.aws.S3.DownloadTarget

DropRowDuplicatesProcessor - Class in com.lumiomedical.etl.dataframe.processor.row

DropRowDuplicatesProcessor() - Constructor for class com.lumiomedical.etl.dataframe.processor.row.DropRowDuplicatesProcessor

DropRowMissingProcessor - Class in com.lumiomedical.etl.dataframe.processor.row

DropRowMissingProcessor(String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.row.DropRowMissingProcessor

DropRowMissingProcessor(Set<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.row.DropRowMissingProcessor

E

ETL - Class in com.lumiomedical.etl

Starting point for building ETL classes.

ETL() - Constructor for class com.lumiomedical.etl.ETL

ETLCompilationException - Exception in com.lumiomedical.etl

ETLCompilationException(String) - Constructor for exception com.lumiomedical.etl.ETLCompilationException

ETLCompilationException(String, Throwable) - Constructor for exception com.lumiomedical.etl.ETLCompilationException

ETLException - Exception in com.lumiomedical.etl

ETLException(String) - Constructor for exception com.lumiomedical.etl.ETLException

ETLException(String, Throwable) - Constructor for exception com.lumiomedical.etl.ETLException

ETLModule - Class in com.lumiomedical.etl.vault

ETLModule() - Constructor for class com.lumiomedical.etl.vault.ETLModule

ETLRunException - Exception in com.lumiomedical.etl

ETLRunException(String) - Constructor for exception com.lumiomedical.etl.ETLRunException

ETLRunException(String, Throwable) - Constructor for exception com.lumiomedical.etl.ETLRunException

extension - Variable in class com.lumiomedical.etl.utility.aws.S3.DownloadTarget

extract() - Method in class com.lumiomedical.etl.extractor.aws.AmazonS3ListKeys

extract() - Method in class com.lumiomedical.etl.extractor.aws.AmazonS3Streamer

extract() - Method in class com.lumiomedical.etl.extractor.filesystem.FileStreamer

extract() - Method in class com.lumiomedical.etl.extractor.filesystem.FlexibleStreamer

extract() - Method in class com.lumiomedical.etl.extractor.filesystem.ResourceStreamer

extract() - Method in class com.lumiomedical.etl.extractor.ftp.FTPStreamer

extract() - Method in class com.lumiomedical.etl.extractor.http.BasicHttpStreamer

extract() - Method in class com.lumiomedical.etl.extractor.http.HttpStreamer

extract() - Method in class com.lumiomedical.etl.extractor.http.JsoupURLParser

extract(Extractor<O>) - Static method in class com.lumiomedical.etl.transformer.Transformers

ExtractorGenerator<I,O> - Class in com.lumiomedical.etl.generator

ExtractorGenerator(Iterable<I>, Function<I, Extractor<O>>) - Constructor for class com.lumiomedical.etl.generator.ExtractorGenerator

Extractors - Class in com.lumiomedical.etl.extractor

F

FileStreamer - Class in com.lumiomedical.etl.extractor.filesystem

FileStreamer(String) - Constructor for class com.lumiomedical.etl.extractor.filesystem.FileStreamer

FileWriteInputStream<I extends InputStream> - Class in com.lumiomedical.etl.loader.file

FileWriteInputStream(String) - Constructor for class com.lumiomedical.etl.loader.file.FileWriteInputStream

FileWriteInputStream(String, boolean) - Constructor for class com.lumiomedical.etl.loader.file.FileWriteInputStream

FileWriteJson<J extends com.fasterxml.jackson.databind.JsonNode> - Class in com.lumiomedical.etl.loader.file

FileWriteJson(String) - Constructor for class com.lumiomedical.etl.loader.file.FileWriteJson

FileWriteJson(String, boolean) - Constructor for class com.lumiomedical.etl.loader.file.FileWriteJson

FileWriteString - Class in com.lumiomedical.etl.loader.file

FileWriteString(String) - Constructor for class com.lumiomedical.etl.loader.file.FileWriteString

FileWriteString(String, boolean) - Constructor for class com.lumiomedical.etl.loader.file.FileWriteString

FillColumnProcessor<T> - Class in com.lumiomedical.etl.dataframe.processor.column

FillColumnProcessor(ColumnDescriptor<T, ?>, String, Supplier<T>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.FillColumnProcessor

FillColumnProcessor(ColumnDescriptor<T, ?>, String, T) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.FillColumnProcessor

firstLong - Static variable in class com.lumiomedical.etl.dataframe.aggregate.AggregateFunctions

firstString - Static variable in class com.lumiomedical.etl.dataframe.aggregate.AggregateFunctions

FlexibleStreamer - Class in com.lumiomedical.etl.extractor.filesystem

FlexibleStreamer(String) - Constructor for class com.lumiomedical.etl.extractor.filesystem.FlexibleStreamer

FLOAT - com.lumiomedical.etl.dataframe.column.ColumnTypes

FLOAT - Static variable in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

fork() - Static method in class com.lumiomedical.etl.dataframe.Tablesaw

fork(String) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw

forType(ColumnType) - Static method in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

FTPStreamer - Class in com.lumiomedical.etl.extractor.ftp

FTPStreamer(String, int, String, String, String) - Constructor for class com.lumiomedical.etl.extractor.ftp.FTPStreamer

G

generate() - Method in class com.lumiomedical.etl.generator.BatchReaderGenerator

generate() - Method in class com.lumiomedical.etl.generator.ExtractorGenerator

generate() - Method in class com.lumiomedical.etl.generator.IterableGenerator

generate() - Method in class com.lumiomedical.etl.generator.ReaderGenerator

getActiveMapping() - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

getCharset() - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

getColumn(Table, String) - Method in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

getColumnCount() - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

getColumnType() - Method in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

getMapping() - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

getMaxCharsPerColumn() - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

getName() - Method in class com.lumiomedical.etl.dataframe.configuration.ColumnProperties

getName() - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

getQuoteChar() - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

getSampleSize() - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

getSeparator() - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

getSourceIndex() - Method in class com.lumiomedical.etl.dataframe.configuration.ColumnProperties

getStream(AmazonS3, String, String) - Static method in class com.lumiomedical.etl.utility.aws.S3

getTargetIndex() - Method in class com.lumiomedical.etl.dataframe.configuration.ColumnProperties

getType() - Method in enum com.lumiomedical.etl.dataframe.column.ColumnTypes

getType() - Method in class com.lumiomedical.etl.dataframe.configuration.ColumnProperties

getType() - Method in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

getValue(Row, String) - Method in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

Gzip - Class in com.lumiomedical.etl.transformer.archive

Gzip() - Constructor for class com.lumiomedical.etl.transformer.archive.Gzip

GzipDecompressor - Class in com.lumiomedical.etl.transformer.archive

GzipDecompressor() - Constructor for class com.lumiomedical.etl.transformer.archive.GzipDecompressor

H

hasColumn(Table, String) - Static method in class com.lumiomedical.etl.dataframe.Tables

This is just a shorthand for checking the existence of a column in a table by its name.

hasColumn(Table, String, ColumnDescriptor<?, C>) - Static method in class com.lumiomedical.etl.dataframe.Tables

hasHeader() - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

hasNext() - Method in class com.lumiomedical.etl.generator.BatchReaderGenerator

hasNext() - Method in class com.lumiomedical.etl.generator.ExtractorGenerator

hasNext() - Method in class com.lumiomedical.etl.generator.IterableGenerator

hasNext() - Method in class com.lumiomedical.etl.generator.ReaderGenerator

HexToTextProcessor - Class in com.lumiomedical.etl.dataframe.processor.string

HexToTextProcessor(String) - Constructor for class com.lumiomedical.etl.dataframe.processor.string.HexToTextProcessor

HexToTextProcessor(String, Charset) - Constructor for class com.lumiomedical.etl.dataframe.processor.string.HexToTextProcessor

HttpQuery - Class in com.lumiomedical.etl.transformer.http

HttpQuery() - Constructor for class com.lumiomedical.etl.transformer.http.HttpQuery

HttpQuery(HttpClient) - Constructor for class com.lumiomedical.etl.transformer.http.HttpQuery

HttpStreamer - Class in com.lumiomedical.etl.extractor.http

HttpStreamer(HttpClient, HttpRequest) - Constructor for class com.lumiomedical.etl.extractor.http.HttpStreamer

HttpStreamer(HttpRequest) - Constructor for class com.lumiomedical.etl.extractor.http.HttpStreamer

HttpTransformers - Class in com.lumiomedical.etl.transformer.http

I

identifier() - Method in class com.lumiomedical.etl.vault.ETLModule

identifier() - Method in class com.lumiomedical.etl.vault.MappingModule

InputStreamToString - Class in com.lumiomedical.etl.transformer.iostream

InputStreamToString() - Constructor for class com.lumiomedical.etl.transformer.iostream.InputStreamToString

INSTANT - com.lumiomedical.etl.dataframe.column.ColumnTypes

INSTANT - Static variable in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

INTEGER - com.lumiomedical.etl.dataframe.column.ColumnTypes

INTEGER - Static variable in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

isCompatibleColumn(ColumnType) - Method in class com.lumiomedical.etl.dataframe.aggregate.LongAggregateFunction

isCompatibleColumn(ColumnType) - Method in class com.lumiomedical.etl.dataframe.aggregate.StringAggregateFunction

IterableGenerator<T> - Class in com.lumiomedical.etl.generator

IterableGenerator(Iterable<T>) - Constructor for class com.lumiomedical.etl.generator.IterableGenerator

J

JsonArrayToCollection<T,C extends Collection<T>> - Class in com.lumiomedical.etl.transformer.json

JsonArrayToCollection(Function<JsonNode, T>, Collector<T, ?, C>) - Constructor for class com.lumiomedical.etl.transformer.json.JsonArrayToCollection

JsonToInputStream<J extends com.fasterxml.jackson.databind.JsonNode> - Class in com.lumiomedical.etl.transformer.json

JsonToInputStream() - Constructor for class com.lumiomedical.etl.transformer.json.JsonToInputStream

JsonToInputStream(boolean, Charset) - Constructor for class com.lumiomedical.etl.transformer.json.JsonToInputStream

JsonToObject<T> - Class in com.lumiomedical.etl.transformer.json

JsonToObject(Class<T>) - Constructor for class com.lumiomedical.etl.transformer.json.JsonToObject

JsonTransformers - Class in com.lumiomedical.etl.transformer.json

JsoupRequest - Class in com.lumiomedical.etl.transformer.jsoup

JsoupRequest() - Constructor for class com.lumiomedical.etl.transformer.jsoup.JsoupRequest

JsoupRequest(int) - Constructor for class com.lumiomedical.etl.transformer.jsoup.JsoupRequest

JsoupStream - Class in com.lumiomedical.etl.transformer.jsoup

JsoupStream() - Constructor for class com.lumiomedical.etl.transformer.jsoup.JsoupStream

JsoupStream(Charset) - Constructor for class com.lumiomedical.etl.transformer.jsoup.JsoupStream

JsoupURLParser - Class in com.lumiomedical.etl.extractor.http

JsoupURLParser(String) - Constructor for class com.lumiomedical.etl.extractor.http.JsoupURLParser

JsoupURLParser(URL) - Constructor for class com.lumiomedical.etl.extractor.http.JsoupURLParser

K

key - Variable in class com.lumiomedical.etl.utility.aws.S3.DownloadTarget

L

load(ObjectNode) - Method in class com.lumiomedical.etl.dataframe.configuration.loader.json.TablePropertiesNodeLoader

load(TablePropertiesLoader<I>, I) - Static method in interface com.lumiomedical.etl.dataframe.configuration.loader.TablePropertiesLoader

load(I) - Method in interface com.lumiomedical.etl.dataframe.configuration.loader.TablePropertiesLoader

load(I) - Method in class com.lumiomedical.etl.loader.file.FileWriteInputStream

load(J) - Method in class com.lumiomedical.etl.loader.file.FileWriteJson

load(InputStream) - Method in class com.lumiomedical.etl.dataframe.configuration.loader.iostream.TablePropertiesJSONStreamLoader

load(InputStream) - Method in class com.lumiomedical.etl.dataframe.configuration.loader.iostream.TablePropertiesYAMLStreamLoader

load(InputStream) - Method in class com.lumiomedical.etl.loader.zip.UnzipContents

load(String) - Method in class com.lumiomedical.etl.dataframe.configuration.loader.file.TablePropertiesFileLoader

load(String) - Method in class com.lumiomedical.etl.dataframe.configuration.loader.file.TablePropertiesFlexibleLoader

load(String) - Method in class com.lumiomedical.etl.dataframe.configuration.loader.resource.TablePropertiesResourceLoader

load(String) - Method in class com.lumiomedical.etl.loader.file.FileWriteString

load(Table) - Method in class com.lumiomedical.etl.loader.tablesaw.TablesawCSVWrite

Loaders - Class in com.lumiomedical.etl.loader

loadProperties(String) - Static method in class com.lumiomedical.etl.utility.aws.S3

LOCAL_DATE - com.lumiomedical.etl.dataframe.column.ColumnTypes

LOCAL_DATE_TIME - com.lumiomedical.etl.dataframe.column.ColumnTypes

LOCAL_TIME - com.lumiomedical.etl.dataframe.column.ColumnTypes

localPath - Variable in class com.lumiomedical.etl.utility.aws.S3.DownloadTarget

logger - Static variable in class com.lumiomedical.etl.logging.Logging

logger(String) - Static method in class com.lumiomedical.etl.logging.Logging

Logging - Class in com.lumiomedical.etl.logging

Logging() - Constructor for class com.lumiomedical.etl.logging.Logging

LONG - com.lumiomedical.etl.dataframe.column.ColumnTypes

LONG - Static variable in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

LongAggregateFunction - Class in com.lumiomedical.etl.dataframe.aggregate

LongAggregateFunction(String) - Constructor for class com.lumiomedical.etl.dataframe.aggregate.LongAggregateFunction

M

MapColumnIntoProcessor<T,U,C1 extends tech.tablesaw.columns.Column<T>,C2 extends tech.tablesaw.columns.Column<U>> - Class in com.lumiomedical.etl.dataframe.processor.column

Transforms the values in a given set of columns using a provided mapping function.

MapColumnIntoProcessor(ColumnDescriptor<T, C1>, ColumnDescriptor<U, C2>, Function<T, U>, String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.MapColumnIntoProcessor

MapColumnIntoProcessor(ColumnDescriptor<T, C1>, ColumnDescriptor<U, C2>, Function<T, U>, Collection<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.MapColumnIntoProcessor

MapColumnProcessor<T,C extends tech.tablesaw.columns.Column<T>> - Class in com.lumiomedical.etl.dataframe.processor.column

Transforms the values in a given set of columns using a provided mapping function.

MapColumnProcessor(ColumnDescriptor<T, C>, Function<T, T>, String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.MapColumnProcessor

MapColumnProcessor(ColumnDescriptor<T, C>, Function<T, T>, Collection<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.MapColumnProcessor

MapLongToStringProcessor - Class in com.lumiomedical.etl.dataframe.processor.column

A MapColumnIntoProcessor shorthand that can map a Long column to a String column given a user-provided mapping function.

MapLongToStringProcessor(Function<Long, String>, String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.MapLongToStringProcessor

MapLongToStringProcessor(Function<Long, String>, Collection<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.MapLongToStringProcessor

mapper - Variable in class com.lumiomedical.etl.dataframe.processor.column.MapColumnIntoProcessor

mapper - Variable in class com.lumiomedical.etl.dataframe.processor.column.MapColumnProcessor

MappingModule - Class in com.lumiomedical.etl.vault

MappingModule() - Constructor for class com.lumiomedical.etl.vault.MappingModule

ModifyColumnMissingProcessor<T,C extends tech.tablesaw.columns.Column<T>> - Class in com.lumiomedical.etl.dataframe.processor.column

ModifyColumnMissingProcessor(ColumnDescriptor<T, C>, String, Supplier<T>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.ModifyColumnMissingProcessor

ModifyColumnMissingProcessor(ColumnDescriptor<T, C>, String, T) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.ModifyColumnMissingProcessor

ModifyRowMissingProcessor - Class in com.lumiomedical.etl.dataframe.processor.row

Transforms any row with missing values using a Consumer that has access to the whole Row.

ModifyRowMissingProcessor(String, Consumer<Row>) - Constructor for class com.lumiomedical.etl.dataframe.processor.row.ModifyRowMissingProcessor

ModifyRowProcessor - Class in com.lumiomedical.etl.dataframe.processor.row

ModifyRowProcessor(Consumer<Row>) - Constructor for class com.lumiomedical.etl.dataframe.processor.row.ModifyRowProcessor

N

name - Variable in class com.lumiomedical.etl.utility.aws.S3.DownloadTarget

nonFatal(Extractor<O>) - Static method in class com.lumiomedical.etl.extractor.Extractors

nonFatal(BiTransformer<I1, I2, O>) - Static method in class com.lumiomedical.etl.transformer.Transformers

nonFatal(Transformer<I, O>) - Static method in class com.lumiomedical.etl.transformer.Transformers

O

ObjectToJsonString<T> - Class in com.lumiomedical.etl.transformer.json

ObjectToJsonString() - Constructor for class com.lumiomedical.etl.transformer.json.ObjectToJsonString

ObjectToJsonString(boolean) - Constructor for class com.lumiomedical.etl.transformer.json.ObjectToJsonString

ObjectToYamlString<T> - Class in com.lumiomedical.etl.transformer.yaml

ObjectToYamlString() - Constructor for class com.lumiomedical.etl.transformer.yaml.ObjectToYamlString

ObjectToYamlString(boolean) - Constructor for class com.lumiomedical.etl.transformer.yaml.ObjectToYamlString

P

ParseDateProcessor - Class in com.lumiomedical.etl.dataframe.processor.date

ParseDateProcessor(String, String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.date.ParseDateProcessor

ParseDateProcessor(String, ZoneId, String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.date.ParseDateProcessor

ParseDateProcessor(String, ZoneId, Collection<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.date.ParseDateProcessor

ParseDateProcessor(String, Collection<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.date.ParseDateProcessor

ParseJsonArray - Class in com.lumiomedical.etl.transformer.json

ParseJsonArray() - Constructor for class com.lumiomedical.etl.transformer.json.ParseJsonArray

ParseJsonObject - Class in com.lumiomedical.etl.transformer.json

ParseJsonObject() - Constructor for class com.lumiomedical.etl.transformer.json.ParseJsonObject

ParseYamlArray - Class in com.lumiomedical.etl.transformer.yaml

ParseYamlArray() - Constructor for class com.lumiomedical.etl.transformer.yaml.ParseYamlArray

ParseYamlObject - Class in com.lumiomedical.etl.transformer.yaml

ParseYamlObject() - Constructor for class com.lumiomedical.etl.transformer.yaml.ParseYamlObject

print(Table) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw

printAll(Table) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw

PrintColumnNamesProcessor - Class in com.lumiomedical.etl.dataframe.processor.print

PrintColumnNamesProcessor() - Constructor for class com.lumiomedical.etl.dataframe.processor.print.PrintColumnNamesProcessor

printSchema(Table) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw

PrintSchemaProcessor - Class in com.lumiomedical.etl.dataframe.processor.print

PrintSchemaProcessor() - Constructor for class com.lumiomedical.etl.dataframe.processor.print.PrintSchemaProcessor

printStructure(Table) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw

PrintStructureProcessor - Class in com.lumiomedical.etl.dataframe.processor.print

PrintStructureProcessor() - Constructor for class com.lumiomedical.etl.dataframe.processor.print.PrintStructureProcessor

PrintTableProcessor - Class in com.lumiomedical.etl.dataframe.processor.print

PrintTableProcessor(int, String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.print.PrintTableProcessor

PrintTableProcessor(String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.print.PrintTableProcessor

process(ObjectNode, Definitions) - Method in class com.lumiomedical.etl.vault.ETLModule

process(ObjectNode, Definitions) - Method in class com.lumiomedical.etl.vault.MappingModule

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.AddColumnFillProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.AddColumnProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.AddColumnRowIndexProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.AddColumnRowIndexPropertiesProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.CloneColumnProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.CompileColumnsToJSONProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.FillColumnProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.MapColumnIntoProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.MapColumnProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.ModifyColumnMissingProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.RemoveColumnProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.RenameColumnPatternProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.RenameColumnProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.RenameColumnPropertiesProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.column.SelectColumnProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.CompositeProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.date.ParseDateProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.print.PrintColumnNamesProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.print.PrintSchemaProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.print.PrintStructureProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.print.PrintTableProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.row.DropRowDuplicatesProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.row.DropRowMissingProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.row.ModifyRowMissingProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.row.ModifyRowProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.string.HexToTextProcessor

process(Table) - Method in class com.lumiomedical.etl.dataframe.processor.string.StringConcatColumnProcessor

process(Table) - Method in interface com.lumiomedical.etl.dataframe.processor.TableProcessor

processors(TableProcessor...) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw

Produces a flow transformer from a stack of TableProcessor instances.

provideCompiler() - Method in class com.lumiomedical.etl.ETL

provideFlows() - Method in class com.lumiomedical.etl.ETL

R

ReaderGenerator - Class in com.lumiomedical.etl.generator

ReaderGenerator(InputStream) - Constructor for class com.lumiomedical.etl.generator.ReaderGenerator

RegexReplace - Class in com.lumiomedical.etl.transformer.text

RegexReplace(String, String) - Constructor for class com.lumiomedical.etl.transformer.text.RegexReplace

RegexReplace(String, Function<MatchResult, String>) - Constructor for class com.lumiomedical.etl.transformer.text.RegexReplace

RegexReplace(Pattern, String) - Constructor for class com.lumiomedical.etl.transformer.text.RegexReplace

RegexReplace(Pattern, Function<MatchResult, String>) - Constructor for class com.lumiomedical.etl.transformer.text.RegexReplace

RegexReplaceProcessor - Class in com.lumiomedical.etl.dataframe.processor.string

RegexReplaceProcessor(String, Function<MatchResult, String>, String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.string.RegexReplaceProcessor

RegexReplaceProcessor(String, Function<MatchResult, String>, Collection<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.string.RegexReplaceProcessor

RemoveColumnProcessor - Class in com.lumiomedical.etl.dataframe.processor.column

Removes an arbitrary number of columns from a given table.

RemoveColumnProcessor(String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.RemoveColumnProcessor

RemoveColumnProcessor(Collection<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.RemoveColumnProcessor

RenameColumnPatternProcessor - Class in com.lumiomedical.etl.dataframe.processor.column

Renames columns from a given table using pattern matching.

RenameColumnPatternProcessor(String) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.RenameColumnPatternProcessor

RenameColumnPatternProcessor(String, BiFunction<String, Matcher, String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.RenameColumnPatternProcessor

RenameColumnProcessor - Class in com.lumiomedical.etl.dataframe.processor.column

Renames an arbitrary number of columns from a given table using a name map.

RenameColumnProcessor(String, String) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.RenameColumnProcessor

RenameColumnProcessor(Map<String, String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.RenameColumnProcessor

RenameColumnPropertiesProcessor - Class in com.lumiomedical.etl.dataframe.processor.column

Renames an arbitrary number of columns from a given table using a name map provided by a TableProperties instance.

RenameColumnPropertiesProcessor(TableProperties) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.RenameColumnPropertiesProcessor

requiresRowIndex() - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

ResourceStreamer - Class in com.lumiomedical.etl.extractor.filesystem

ResourceStreamer(String) - Constructor for class com.lumiomedical.etl.extractor.filesystem.ResourceStreamer

returnType() - Method in class com.lumiomedical.etl.dataframe.aggregate.LongAggregateFunction

returnType() - Method in class com.lumiomedical.etl.dataframe.aggregate.StringAggregateFunction

run() - Method in class com.lumiomedical.etl.ETL

run(Input) - Method in class com.lumiomedical.etl.ETL

S

S3 - Class in com.lumiomedical.etl.utility.aws

Small helper class for S3-based common operations

S3.DownloadTarget - Class in com.lumiomedical.etl.utility.aws

select(String...) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw

select(Column<?>...) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw

SelectColumnProcessor - Class in com.lumiomedical.etl.dataframe.processor.column

Returns the output of a dataframe SELECT operation over a provided Table.

SelectColumnProcessor(String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.SelectColumnProcessor

SelectColumnProcessor(Collection<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.column.SelectColumnProcessor

setAddRowIndex(boolean) - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

setCharset(Charset) - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

setColumnCount(int) - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

setHasHeader(boolean) - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

setMapping(List<ColumnProperties>) - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

setMaxCharsPerColumn(int) - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

setName(String) - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

setPredicate(Predicate<String>) - Method in class com.lumiomedical.etl.dataframe.processor.date.ParseDateProcessor

setPreparator(Function<String, String>) - Method in class com.lumiomedical.etl.dataframe.processor.date.ParseDateProcessor

setQuoteChar(Character) - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

setSampleSize(int) - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

setSeparator(Character) - Method in class com.lumiomedical.etl.dataframe.configuration.TableProperties

setValue(Row, String, T) - Method in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

SHORT - com.lumiomedical.etl.dataframe.column.ColumnTypes

SHORT - Static variable in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

SKIP - com.lumiomedical.etl.dataframe.column.ColumnTypes

SkipLine - Class in com.lumiomedical.etl.transformer.iostream

SkipLine() - Constructor for class com.lumiomedical.etl.transformer.iostream.SkipLine

SkipLine(int) - Constructor for class com.lumiomedical.etl.transformer.iostream.SkipLine

STRING - com.lumiomedical.etl.dataframe.column.ColumnTypes

STRING - Static variable in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

StringAggregateFunction - Class in com.lumiomedical.etl.dataframe.aggregate

StringAggregateFunction(String) - Constructor for class com.lumiomedical.etl.dataframe.aggregate.StringAggregateFunction

StringConcatColumnProcessor - Class in com.lumiomedical.etl.dataframe.processor.string

StringConcatColumnProcessor(String, String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.string.StringConcatColumnProcessor

StringReplaceProcessor - Class in com.lumiomedical.etl.dataframe.processor.string

StringReplaceProcessor(Function<String, String>, String...) - Constructor for class com.lumiomedical.etl.dataframe.processor.string.StringReplaceProcessor

StringReplaceProcessor(Function<String, String>, Collection<String>) - Constructor for class com.lumiomedical.etl.dataframe.processor.string.StringReplaceProcessor

StringToInputStream - Class in com.lumiomedical.etl.transformer.iostream

StringToInputStream() - Constructor for class com.lumiomedical.etl.transformer.iostream.StringToInputStream

StringToInputStream(Charset) - Constructor for class com.lumiomedical.etl.transformer.iostream.StringToInputStream

T

TableProcessor - Interface in com.lumiomedical.etl.dataframe.processor

TableProcessorException - Exception in com.lumiomedical.etl.dataframe.processor

TableProcessorException(String) - Constructor for exception com.lumiomedical.etl.dataframe.processor.TableProcessorException

TableProcessorException(String, Throwable) - Constructor for exception com.lumiomedical.etl.dataframe.processor.TableProcessorException

TableProperties - Class in com.lumiomedical.etl.dataframe.configuration

TableProperties() - Constructor for class com.lumiomedical.etl.dataframe.configuration.TableProperties

TablePropertiesFileLoader - Class in com.lumiomedical.etl.dataframe.configuration.loader.file

TablePropertiesFileLoader(TablePropertiesLoader<InputStream>) - Constructor for class com.lumiomedical.etl.dataframe.configuration.loader.file.TablePropertiesFileLoader

TablePropertiesFlexibleLoader - Class in com.lumiomedical.etl.dataframe.configuration.loader.file

TablePropertiesFlexibleLoader(TablePropertiesLoader<InputStream>) - Constructor for class com.lumiomedical.etl.dataframe.configuration.loader.file.TablePropertiesFlexibleLoader

TablePropertiesJSONStreamLoader - Class in com.lumiomedical.etl.dataframe.configuration.loader.iostream

TablePropertiesJSONStreamLoader() - Constructor for class com.lumiomedical.etl.dataframe.configuration.loader.iostream.TablePropertiesJSONStreamLoader

TablePropertiesLoader<I> - Interface in com.lumiomedical.etl.dataframe.configuration.loader

TablePropertiesLoadingException - Exception in com.lumiomedical.etl.dataframe.configuration.loader

TablePropertiesLoadingException(String) - Constructor for exception com.lumiomedical.etl.dataframe.configuration.loader.TablePropertiesLoadingException

TablePropertiesLoadingException(String, Throwable) - Constructor for exception com.lumiomedical.etl.dataframe.configuration.loader.TablePropertiesLoadingException

TablePropertiesNodeLoader - Class in com.lumiomedical.etl.dataframe.configuration.loader.json

TablePropertiesNodeLoader() - Constructor for class com.lumiomedical.etl.dataframe.configuration.loader.json.TablePropertiesNodeLoader

TablePropertiesResourceLoader - Class in com.lumiomedical.etl.dataframe.configuration.loader.resource

TablePropertiesResourceLoader(TablePropertiesLoader<InputStream>) - Constructor for class com.lumiomedical.etl.dataframe.configuration.loader.resource.TablePropertiesResourceLoader

TablePropertiesYAMLStreamLoader - Class in com.lumiomedical.etl.dataframe.configuration.loader.iostream

TablePropertiesYAMLStreamLoader() - Constructor for class com.lumiomedical.etl.dataframe.configuration.loader.iostream.TablePropertiesYAMLStreamLoader

Tables - Class in com.lumiomedical.etl.dataframe

Tables() - Constructor for class com.lumiomedical.etl.dataframe.Tables

Tablesaw - Class in com.lumiomedical.etl.dataframe

An experimental class which goal is to allow slightly more concise code for some common use-cases.

Tablesaw.Criterion - Class in com.lumiomedical.etl.dataframe

TablesawCache - Class in com.lumiomedical.etl.transformer.tablesaw

TablesawCache(Transformer<InputStream, Table>) - Constructor for class com.lumiomedical.etl.transformer.tablesaw.TablesawCache

TablesawCache(Transformer<InputStream, Table>, boolean) - Constructor for class com.lumiomedical.etl.transformer.tablesaw.TablesawCache

TablesawCSVParse - Class in com.lumiomedical.etl.transformer.tablesaw

TablesawCSVParse() - Constructor for class com.lumiomedical.etl.transformer.tablesaw.TablesawCSVParse

TablesawCSVParse(TableProperties) - Constructor for class com.lumiomedical.etl.transformer.tablesaw.TablesawCSVParse

TablesawCSVParse(String) - Constructor for class com.lumiomedical.etl.transformer.tablesaw.TablesawCSVParse

TablesawCSVWrite - Class in com.lumiomedical.etl.loader.tablesaw

TablesawCSVWrite(String) - Constructor for class com.lumiomedical.etl.loader.tablesaw.TablesawCSVWrite

TablesawCSVWrite(String, Charset) - Constructor for class com.lumiomedical.etl.loader.tablesaw.TablesawCSVWrite

TablesawFork - Class in com.lumiomedical.etl.transformer.tablesaw

TablesawFork() - Constructor for class com.lumiomedical.etl.transformer.tablesaw.TablesawFork

TablesawFork(String) - Constructor for class com.lumiomedical.etl.transformer.tablesaw.TablesawFork

TablesawPrint - Class in com.lumiomedical.etl.transformer.tablesaw

TablesawPrint(int, String...) - Constructor for class com.lumiomedical.etl.transformer.tablesaw.TablesawPrint

TablesawPrint(String...) - Constructor for class com.lumiomedical.etl.transformer.tablesaw.TablesawPrint

TablesawProcessor - Class in com.lumiomedical.etl.transformer.tablesaw

TablesawProcessor(TableProcessor) - Constructor for class com.lumiomedical.etl.transformer.tablesaw.TablesawProcessor

TablesawProcessor(TableProcessor...) - Constructor for class com.lumiomedical.etl.transformer.tablesaw.TablesawProcessor

TarGzip - Class in com.lumiomedical.etl.transformer.archive

TarGzip() - Constructor for class com.lumiomedical.etl.transformer.archive.TarGzip

TarGzipDecompressor - Class in com.lumiomedical.etl.transformer.archive

TarGzipDecompressor() - Constructor for class com.lumiomedical.etl.transformer.archive.TarGzipDecompressor

TEXT - com.lumiomedical.etl.dataframe.column.ColumnTypes

TEXT - Static variable in class com.lumiomedical.etl.dataframe.descriptor.ColumnDescriptor

toJson(Object) - Static method in class com.lumiomedical.etl.transformer.json.JsonTransformers

toYaml(Object) - Static method in class com.lumiomedical.etl.transformer.yaml.YamlTransformers

transform(C) - Method in class com.lumiomedical.etl.transformer.text.BasicTokenFrequency

transform(CI) - Method in class com.lumiomedical.etl.transformer.text.BasicTokenMapping

transform(JsonNode) - Method in class com.lumiomedical.etl.transformer.json.JsonToObject

transform(JsonNode) - Method in class com.lumiomedical.etl.transformer.yaml.YamlToObject

transform(ArrayNode) - Method in class com.lumiomedical.etl.transformer.json.JsonArrayToCollection

transform(I) - Method in class com.lumiomedical.etl.transformer.filesystem.CreateDirectory

transform(J) - Method in class com.lumiomedical.etl.transformer.json.JsonToInputStream

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.archive.Gzip

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.archive.GzipDecompressor

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.archive.TarGzip

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.archive.TarGzipDecompressor

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.iostream.BufferizeInputStream

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.iostream.InputStreamToString

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.iostream.SkipLine

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.json.ParseJsonArray

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.json.ParseJsonObject

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.jsoup.JsoupStream

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.tablesaw.TablesawCache

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.tablesaw.TablesawCSVParse

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.yaml.ParseYamlArray

transform(InputStream) - Method in class com.lumiomedical.etl.transformer.yaml.ParseYamlObject

transform(String) - Method in class com.lumiomedical.etl.transformer.iostream.StringToInputStream

transform(String) - Method in class com.lumiomedical.etl.transformer.text.BasicSentenceSplitter

transform(String) - Method in class com.lumiomedical.etl.transformer.text.BasicSentenceTokenizer

transform(String) - Method in class com.lumiomedical.etl.transformer.text.RegexReplace

transform(HttpRequest) - Method in class com.lumiomedical.etl.transformer.http.BasicHttpQuery

transform(HttpRequest) - Method in class com.lumiomedical.etl.transformer.http.HttpQuery

transform(URL) - Method in class com.lumiomedical.etl.transformer.jsoup.JsoupRequest

transform(T) - Method in class com.lumiomedical.etl.transformer.json.ObjectToJsonString

transform(T) - Method in class com.lumiomedical.etl.transformer.yaml.ObjectToYamlString

transform(Table) - Method in class com.lumiomedical.etl.transformer.tablesaw.TablesawFork

transform(Table) - Method in class com.lumiomedical.etl.transformer.tablesaw.TablesawPrint

transform(Table) - Method in class com.lumiomedical.etl.transformer.tablesaw.TablesawProcessor

transform(Y) - Method in class com.lumiomedical.etl.transformer.yaml.YamlToInputStream

Transformers - Class in com.lumiomedical.etl.transformer

U

UnzipContents - Class in com.lumiomedical.etl.loader.zip

UnzipContents(String) - Constructor for class com.lumiomedical.etl.loader.zip.UnzipContents

upload(AmazonS3, String, String, String) - Static method in class com.lumiomedical.etl.utility.aws.S3

V

valueOf(String) - Static method in enum com.lumiomedical.etl.dataframe.column.ColumnTypes

Returns the enum constant of this type with the specified name.

values() - Static method in enum com.lumiomedical.etl.dataframe.column.ColumnTypes

Returns an array containing the constants of this enum type, in the order they are declared.

W

where(Function<Table, Selection>) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw

where(Selection) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw

whereIsEqualTo(String, Double) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsEqualTo(String, Float) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsEqualTo(String, Integer) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsEqualTo(String, Long) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsEqualTo(String, String) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsEqualTo(String, Instant) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsFalse(String) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsIn(String, Double...) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsIn(String, Float...) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsIn(String, Integer...) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsIn(String, Long...) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsIn(String, String...) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsMissing(String) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsNotMissing(String) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

whereIsTrue(String) - Static method in class com.lumiomedical.etl.dataframe.Tablesaw.Criterion

Y

YamlToInputStream<Y extends com.fasterxml.jackson.databind.JsonNode> - Class in com.lumiomedical.etl.transformer.yaml

YamlToInputStream() - Constructor for class com.lumiomedical.etl.transformer.yaml.YamlToInputStream

YamlToInputStream(boolean, Charset) - Constructor for class com.lumiomedical.etl.transformer.yaml.YamlToInputStream

YamlToObject<T> - Class in com.lumiomedical.etl.transformer.yaml

YamlToObject(Class<T>) - Constructor for class com.lumiomedical.etl.transformer.yaml.YamlToObject

YamlTransformers - Class in com.lumiomedical.etl.transformer.yaml

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