Index (Lumio Record 0.1.2 API)

A B C D E F G H I L M N O P Q R S T U
All Classes All Packages

A

AbstractSource<T,OT> - Class in com.lumiomedical.record.source
AbstractSource(String, Class<?>, Class<OT>) - Constructor for class com.lumiomedical.record.source.AbstractSource
addSourceId(SourceCollection<S, R>, S) - Method in class com.lumiomedical.record.Record
addSourceId(SourceCollection<S, T>, S) - Method in interface com.lumiomedical.record.source.Sourceable
addSourceId(SourceCollection<T, OT>, T) - Method in class com.lumiomedical.record.source.Sourcing
any() - Static method in class com.lumiomedical.record.Referential: Produces a referential matching any point in time.
applyReferentialCriteria(BasicDBObject, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
applyReferentialCriteria(Bson, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
asAny() - Method in class com.lumiomedical.record.Referential
asAny() - Method in class com.lumiomedical.record.ReferentialAny
asAt() - Method in class com.lumiomedical.record.Referential
asAt() - Method in class com.lumiomedical.record.ReferentialAt
asBetween() - Method in class com.lumiomedical.record.Referential
asBetween() - Method in class com.lumiomedical.record.ReferentialBetween
asNow() - Method in class com.lumiomedical.record.Referential
asNow() - Method in class com.lumiomedical.record.ReferentialNow
at(Instant) - Static method in class com.lumiomedical.record.Referential: Produces a referential matching all periods active at the provided instant.

B

between(Instant, Instant) - Static method in class com.lumiomedical.record.Referential: Produces a referential matching all periods active between the two provided instant.
buildRecord(BasicDBObject) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore

C

com.lumiomedical.record - package com.lumiomedical.record
com.lumiomedical.record.logging - package com.lumiomedical.record.logging
com.lumiomedical.record.schema.serialization - package com.lumiomedical.record.schema.serialization
com.lumiomedical.record.source - package com.lumiomedical.record.source
com.lumiomedical.record.source.register - package com.lumiomedical.record.source.register
com.lumiomedical.record.store - package com.lumiomedical.record.store
com.lumiomedical.record.store.mongodb - package com.lumiomedical.record.store.mongodb
com.lumiomedical.record.store.mongodb.factory - package com.lumiomedical.record.store.mongodb.factory
count() - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
count() - Method in interface com.lumiomedical.record.store.RecordStore: Counts all entities.
count(Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
count(Referential) - Method in interface com.lumiomedical.record.store.RecordStore
count(Query) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
count(Query) - Method in interface com.lumiomedical.record.store.RecordStore: Counts all entities matching the custom query description.
count(Query, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
count(Query, Referential) - Method in interface com.lumiomedical.record.store.RecordStore
createIndexes() - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore

D

dbList(BasicDBObject...) - Static method in class com.lumiomedical.record.store.mongodb.DBObjects
dbList(Object...) - Static method in class com.lumiomedical.record.store.mongodb.DBObjects
dbObject() - Static method in class com.lumiomedical.record.store.mongodb.DBObjects
dbObject(String, Object) - Static method in class com.lumiomedical.record.store.mongodb.DBObjects
DBObjects - Class in com.lumiomedical.record.store.mongodb
deserialize(JsonParser, DeserializationContext) - Method in class com.lumiomedical.record.schema.serialization.SourcingDeserializer

E

enrichBuild(BasicDBObject, R) - Method in class com.lumiomedical.record.store.mongodb.factory.RecordFactory
enrichTranscript(R, BasicDBObject) - Method in class com.lumiomedical.record.store.mongodb.factory.RecordFactory
equals(Object) - Method in class com.lumiomedical.record.source.AbstractSource
equals(Object) - Method in class com.lumiomedical.record.source.Sourcing
executeTransaction(Runnable, String, String) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore

F

find(Query) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
find(Query) - Method in interface com.lumiomedical.record.store.RecordStore
find(Query, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
find(Query, Referential) - Method in interface com.lumiomedical.record.store.RecordStore
find(Query, Filter) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
find(Query, Filter) - Method in interface com.lumiomedical.record.store.RecordStore
find(Query, Filter, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
find(Query, Filter, Referential) - Method in interface com.lumiomedical.record.store.RecordStore
find(String) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
find(String) - Method in interface com.lumiomedical.record.store.RecordStore
find(String, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
find(String, Referential) - Method in interface com.lumiomedical.record.store.RecordStore
findByDbObject(DBObject, Filter) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
forName(Class<ST>, String) - Static method in class com.lumiomedical.record.source.register.SourceRegister
forType(Class<T>) - Static method in class com.lumiomedical.record.source.register.SourceRegister

G

generateUid() - Static method in interface com.lumiomedical.record.UidHolder: Generates a random UID.
generateUid(String...) - Static method in interface com.lumiomedical.record.UidHolder: Generates a UID using a sequence of strings that will be individually hashed and joined.
getAt() - Method in class com.lumiomedical.record.ReferentialAt
getAt() - Method in class com.lumiomedical.record.ReferentialNow
getAt() - Method in class com.lumiomedical.record.ReferentialPoint
getFrom() - Method in class com.lumiomedical.record.ReferentialBetween
getHash() - Method in interface com.lumiomedical.record.HashHolder
getHash() - Method in class com.lumiomedical.record.Record
getId() - Method in class com.lumiomedical.record.Record
getInstantOrDefault(BasicDBObject, String, Instant) - Static method in class com.lumiomedical.record.store.mongodb.DBObjects
getInstantOrNull(BasicDBObject, String) - Static method in class com.lumiomedical.record.store.mongodb.DBObjects
getOfficialValidityEnd() - Method in class com.lumiomedical.record.Record
getOfficialValidityStart() - Method in class com.lumiomedical.record.Record
getSourcedType() - Method in interface com.lumiomedical.record.source.SourceSet
getSourceId(AbstractSource<S, R>) - Method in class com.lumiomedical.record.Record
getSourceId(AbstractSource<S, T>) - Method in interface com.lumiomedical.record.source.Sourceable
getSourceId(AbstractSource<T, OT>) - Method in class com.lumiomedical.record.source.Sourcing
getSources() - Method in class com.lumiomedical.record.Record
getSources() - Method in class com.lumiomedical.record.source.Sourcing
getTo() - Method in class com.lumiomedical.record.ReferentialBetween
getUid() - Method in class com.lumiomedical.record.Record
getUid() - Method in interface com.lumiomedical.record.UidHolder
getValidityEnd() - Method in class com.lumiomedical.record.Record
getValidityStart() - Method in class com.lumiomedical.record.Record

H

hasEnabledTransactions() - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
hashCode() - Method in class com.lumiomedical.record.source.AbstractSource
hashCode() - Method in class com.lumiomedical.record.source.Sourcing
hasher - Static variable in interface com.lumiomedical.record.UidHolder
HashHolder - Interface in com.lumiomedical.record
hasSource(AbstractSource<S, R>) - Method in class com.lumiomedical.record.Record
hasSource(AbstractSource<S, T>) - Method in interface com.lumiomedical.record.source.Sourceable
hasSource(AbstractSource<T, OT>) - Method in class com.lumiomedical.record.source.Sourcing

I

IndexedSource - Annotation Type in com.lumiomedical.record.source.register
isAny() - Method in class com.lumiomedical.record.Referential
isAny() - Method in class com.lumiomedical.record.ReferentialAny
isAt() - Method in class com.lumiomedical.record.Referential
isAt() - Method in class com.lumiomedical.record.ReferentialAt
isBetween() - Method in class com.lumiomedical.record.Referential
isBetween() - Method in class com.lumiomedical.record.ReferentialBetween
isEmpty() - Method in class com.lumiomedical.record.source.Sourcing
isNow() - Method in class com.lumiomedical.record.Referential
isNow() - Method in class com.lumiomedical.record.ReferentialNow
itemType() - Method in class com.lumiomedical.record.source.SourceCollection

L

list(Query) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
list(Query) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using a custom query description.
list(Query, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
list(Query, Referential) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using a custom query description.
list(Query, Filter) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
list(Query, Filter) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using a custom query description and a query modifier.
list(Query, Filter, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
list(Query, Filter, Referential) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using a custom query description and a query modifier.
list(Collection<String>) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
list(Collection<String>) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using their UIDs.
list(Collection<String>, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
list(Collection<String>, Referential) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using their UIDs.
list(Collection<String>, Filter) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
list(Collection<String>, Filter) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using their UIDs and a query modifier.
list(Collection<String>, Filter, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
list(Collection<String>, Filter, Referential) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using their UIDs and a query modifier.
listByDbObject(DBObject, Filter) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
listForSourceSet(Class<ST>) - Static method in class com.lumiomedical.record.source.register.SourceRegister
logger - Static variable in class com.lumiomedical.record.logging.Logging
logger(String) - Static method in class com.lumiomedical.record.logging.Logging
Logging - Class in com.lumiomedical.record.logging
Logging() - Constructor for class com.lumiomedical.record.logging.Logging

M

map(Query) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
map(Query) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using a custom query description.
map(Query, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
map(Query, Referential) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using a custom query description.
map(Query, Filter) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
map(Query, Filter) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using a custom query description and a query modifier.
map(Query, Filter, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
map(Query, Filter, Referential) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using a custom query description and a query modifier.
map(Collection<String>) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
map(Collection<String>) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using their UIDs.
map(Collection<String>, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
map(Collection<String>, Referential) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using their UIDs.
map(Collection<String>, Filter) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
map(Collection<String>, Filter) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using their UIDs and a query modifier.
map(Collection<String>, Filter, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
map(Collection<String>, Filter, Referential) - Method in interface com.lumiomedical.record.store.RecordStore: Finds a collection of entities using their UIDs and a query modifier.
mapByDbObject(DBObject, Filter) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
mapBySourceIds(Source<S, R>, Collection<S>, Builder<Document, T>, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
mapBySourceIds(Source<S, T>, Collection<S>, Builder<Document, C>) - Method in class com.lumiomedical.record.store.mongodb.MongoDBSourceableStore
mapUidBySourceIds(Source<S, R>, Collection<S>) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
mapUidBySourceIds(Source<S, R>, Collection<S>) - Method in interface com.lumiomedical.record.store.RecordStore
mapUidBySourceIds(Source<S, R>, Collection<S>, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
mapUidBySourceIds(Source<S, R>, Collection<S>, Referential) - Method in interface com.lumiomedical.record.store.RecordStore
mapUidBySourceIds(Source<S, T>, Collection<S>) - Method in class com.lumiomedical.record.store.mongodb.MongoDBSourceableStore
mapUidBySourceIds(Source<S, T>, Collection<S>) - Method in interface com.lumiomedical.record.store.SourceableStore
MongoDBRecordStore<R extends Record<R>> - Class in com.lumiomedical.record.store.mongodb
MongoDBRecordStore(MongoDBClient, Factory<BasicDBObject, R>) - Constructor for class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
MongoDBSourceableStore<T extends com.noleme.store.query.Identifiable<String> & Sourceable<T>> - Class in com.lumiomedical.record.store.mongodb
MongoDBSourceableStore(MongoDBClient, Factory<BasicDBObject, T>) - Constructor for class com.lumiomedical.record.store.mongodb.MongoDBSourceableStore

N

name() - Method in class com.lumiomedical.record.source.AbstractSource
now() - Static method in class com.lumiomedical.record.Referential: Produces a referential matching all periods presently active.

O

of(String, Class<T>, Class<OT>) - Static method in class com.lumiomedical.record.source.Source
of(String, Class<T>, Class<OT>) - Static method in class com.lumiomedical.record.source.SourceCollection

P

put(Collection<R>) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
put(Collection<R>) - Method in interface com.lumiomedical.record.store.RecordStore
put(Collection<R>, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
put(Collection<R>, Referential) - Method in interface com.lumiomedical.record.store.RecordStore
put(Collection<R>, Referential, Transcriber<BasicDBObject, R>) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
put(Collection<R>, Transcriber<BasicDBObject, R>) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
put(R) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
put(R) - Method in interface com.lumiomedical.record.store.RecordStore
put(R, Referential) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
put(R, Referential) - Method in interface com.lumiomedical.record.store.RecordStore
put(R, Referential, Transcriber<BasicDBObject, R>) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
put(R, Transcriber<BasicDBObject, R>) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
putAt(Collection<Referentialized<R>>) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
putAt(Collection<Referentialized<R>>) - Method in interface com.lumiomedical.record.store.RecordStore
putReferentialized(Collection<Referentialized<R>>, Transcriber<BasicDBObject, R>) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore

Q

queryName() - Method in class com.lumiomedical.record.source.AbstractSource

R

readOnlyHolder(String) - Static method in interface com.lumiomedical.record.UidHolder
record - Variable in class com.lumiomedical.record.store.Referentialized
Record<R> - Class in com.lumiomedical.record
Record() - Constructor for class com.lumiomedical.record.Record
RecordFactory<R extends Record> - Class in com.lumiomedical.record.store.mongodb.factory
RecordFactory() - Constructor for class com.lumiomedical.record.store.mongodb.factory.RecordFactory
RecordStore<R extends Record<R>> - Interface in com.lumiomedical.record.store
referential - Variable in class com.lumiomedical.record.store.Referentialized
Referential - Class in com.lumiomedical.record
Referential() - Constructor for class com.lumiomedical.record.Referential
ReferentialAny - Class in com.lumiomedical.record
ReferentialAny() - Constructor for class com.lumiomedical.record.ReferentialAny
ReferentialAt - Class in com.lumiomedical.record
ReferentialBetween - Class in com.lumiomedical.record
ReferentialBetween(Instant, Instant) - Constructor for class com.lumiomedical.record.ReferentialBetween
Referentialized<R extends Record> - Class in com.lumiomedical.record.store
Referentialized(R, Referential) - Constructor for class com.lumiomedical.record.store.Referentialized
ReferentialNow - Class in com.lumiomedical.record
ReferentialNow() - Constructor for class com.lumiomedical.record.ReferentialNow
ReferentialPoint - Class in com.lumiomedical.record
ReferentialPoint() - Constructor for class com.lumiomedical.record.ReferentialPoint

S

setEnabledTransactions(boolean) - Method in class com.lumiomedical.record.store.mongodb.MongoDBRecordStore
setHash(String) - Method in interface com.lumiomedical.record.HashHolder
setHash(String) - Method in class com.lumiomedical.record.Record
setId(String) - Method in class com.lumiomedical.record.Record
setNonSpecificSourceId(AbstractSource<?, ?>, Object) - Method in class com.lumiomedical.record.source.Sourcing
setOfficialValidityEnd(Instant) - Method in class com.lumiomedical.record.Record
setOfficialValidityStart(Instant) - Method in class com.lumiomedical.record.Record
setSourceId(AbstractSource<S, R>, S) - Method in class com.lumiomedical.record.Record
setSourceId(AbstractSource<S, T>, S) - Method in interface com.lumiomedical.record.source.Sourceable
setSourceId(AbstractSource<T, OT>, T) - Method in class com.lumiomedical.record.source.Sourcing
setSources(Sourcing) - Method in class com.lumiomedical.record.Record
setSources(Map<AbstractSource, Object>) - Method in class com.lumiomedical.record.source.Sourcing
setUid(String) - Method in class com.lumiomedical.record.Record
setUid(String) - Method in interface com.lumiomedical.record.UidHolder
setValidityEnd(Instant) - Method in class com.lumiomedical.record.Record
setValidityStart(Instant) - Method in class com.lumiomedical.record.Record
Source<T,OT> - Class in com.lumiomedical.record.source
Sourceable<T> - Interface in com.lumiomedical.record.source
SourceableStore<T extends Sourceable<T>> - Interface in com.lumiomedical.record.store
SourceCollection<T,OT> - Class in com.lumiomedical.record.source
sourceCollectionOf(String, Class<T>) - Method in interface com.lumiomedical.record.source.SourceSet
sourceOf(String, Class<T>) - Method in interface com.lumiomedical.record.source.SourceSet
SourceRegister - Class in com.lumiomedical.record.source.register: The SourceRegister is responsible for holding references to indexed SourceSets and their Sources.
SourceSet<OT> - Interface in com.lumiomedical.record.source
Sourcing - Class in com.lumiomedical.record.source
Sourcing() - Constructor for class com.lumiomedical.record.source.Sourcing
SourcingDeserializer - Class in com.lumiomedical.record.schema.serialization: This uses quite a bit of unsafe type juggling, but we should be fine due to the fact that Source maps have strictly controlled contents.
SourcingDeserializer() - Constructor for class com.lumiomedical.record.schema.serialization.SourcingDeserializer
SourcingDeserializer(Class<?>) - Constructor for class com.lumiomedical.record.schema.serialization.SourcingDeserializer

T

toString() - Method in class com.lumiomedical.record.Referential
type() - Method in class com.lumiomedical.record.source.AbstractSource
type() - Method in class com.lumiomedical.record.source.Source
type() - Method in class com.lumiomedical.record.source.SourceCollection

U

UidHolder - Interface in com.lumiomedical.record

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