Class MendelVCFHeaderExtender
- java.lang.Object
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- de.charite.compbio.jannovar.mendel.bridge.MendelVCFHeaderExtender
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public class MendelVCFHeaderExtender extends Object
Helper class for extending VCF header for mendelian inheritance annotation- Author:
- Manuel Holtgrewe
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Field Summary
Fields Modifier and Type Field Description static String
AD
Constant for autosomal dominantstatic String
AR
Constant for autosomal recessivestatic String
AR_COMP_HET
Constant for autosomal recessive compound het.static String
AR_HOM_ALT
Constant for autosomal recessive hom.static String
MT
Constant for mitochondrialstatic String
XD
Constant for X dominantstatic String
XR
Constant for X recessivestatic String
XR_COMP_HET
Constant for X recessive compound het.static String
XR_HOM_ALT
Constant for X recessive hom.
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Constructor Summary
Constructors Constructor Description MendelVCFHeaderExtender()
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description void
extendHeader(htsjdk.variant.vcf.VCFHeader vcfHeader)
void
extendHeader(htsjdk.variant.vcf.VCFHeader vcfHeader, String prefix)
static String
key()
static String
key(String prefix)
static String
keySub()
static String
keySub(String prefix)
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Field Detail
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AD
public static String AD
Constant for autosomal dominant
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AR
public static String AR
Constant for autosomal recessive
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XD
public static String XD
Constant for X dominant
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XR
public static String XR
Constant for X recessive
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MT
public static final String MT
Constant for mitochondrial- See Also:
- Constant Field Values
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AR_HOM_ALT
public static String AR_HOM_ALT
Constant for autosomal recessive hom. alt.
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AR_COMP_HET
public static String AR_COMP_HET
Constant for autosomal recessive compound het.
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XR_HOM_ALT
public static String XR_HOM_ALT
Constant for X recessive hom. alt.
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XR_COMP_HET
public static String XR_COMP_HET
Constant for X recessive compound het.
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