Interface VariantContextProcessor
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- All Superinterfaces:
AutoCloseable
,Closeable
- All Known Implementing Classes:
ConsumerProcessor
,CoordinateSortingChecker
,GeneWiseMendelianAnnotationProcessor
public interface VariantContextProcessor extends Closeable
Step in aVariantContext
processing pipeline, designed as a sink- Author:
- Manuel Holtgrewe
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description void
close()
Mark processing as done, no more variants will come in.void
put(htsjdk.variant.variantcontext.VariantContext vc)
Put a Variant Context into the filter.
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Method Detail
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put
void put(htsjdk.variant.variantcontext.VariantContext vc) throws VariantContextFilterException
Put a Variant Context into the filter.- Parameters:
vc
-VariantContext
to put into the filter.- Throws:
VariantContextFilterException
- on problems during the filtration
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close
void close()
Mark processing as done, no more variants will come in.- Specified by:
close
in interfaceAutoCloseable
- Specified by:
close
in interfaceCloseable
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