Package de.charite.compbio.jannovar.mendel.filter

Interface Summary

Interface	Description
VariantContextProcessor	Step in a VariantContext processing pipeline, designed as a sink

Class Summary

Class	Description
ConsumerProcessor	Call a function for each variant put into the pipeline step
CoordinateSortingChecker	Check that the VCF file is sorted by coordinate
GeneWiseMendelianAnnotationProcessor	Process VariantContext objects and annotate them with mendelian inheritance compatibility
VariantContextCounter	A VariantContext with an integer counter and set of compatible modes

Exception Summary

Exception	Description
VariantContextFilterException	Thrown on problems during the filtration.