Hierarchy For All Packages
Package Hierarchies:Class Hierarchy
- java.lang.Object
- de.charite.compbio.jannovar.mendel.filter.ConsumerProcessor (implements de.charite.compbio.jannovar.mendel.filter.VariantContextProcessor)
- de.charite.compbio.jannovar.mendel.filter.CoordinateSortingChecker (implements de.charite.compbio.jannovar.mendel.filter.VariantContextProcessor)
- de.charite.compbio.jannovar.mendel.filter.GeneWiseMendelianAnnotationProcessor (implements de.charite.compbio.jannovar.mendel.filter.VariantContextProcessor)
- de.charite.compbio.jannovar.progress.GenomeRegion
- de.charite.compbio.jannovar.progress.GenomeRegionList
- de.charite.compbio.jannovar.progress.GenomeRegionListFactoryFromSAMSequenceDictionary
- de.charite.compbio.jannovar.htsjdk.GenomeRegionSequenceExtractor
- de.charite.compbio.jannovar.mendel.bridge.MendelVCFHeaderExtender
- de.charite.compbio.jannovar.hgvs.bridge.NucleotideChangeToGenomeVariantTranslationImplBase
- de.charite.compbio.jannovar.hgvs.bridge.NucleotideChangeToGenomeVariantTranslator
- de.charite.compbio.jannovar.hgvs.bridge.NucleotideLocationConverter
- java.lang.Throwable (implements java.io.Serializable)
- java.lang.Exception
- de.charite.compbio.jannovar.hgvs.bridge.CannotTranslateHGVSVariant
- de.charite.compbio.jannovar.htsjdk.InvalidBreakendDescriptionException
- de.charite.compbio.jannovar.htsjdk.InvalidCoordinatesException
- de.charite.compbio.jannovar.JannovarException
- de.charite.compbio.jannovar.mendel.bridge.CannotAnnotateMendelianInheritance
- de.charite.compbio.jannovar.htsjdk.MissingEndInfoField
- de.charite.compbio.jannovar.htsjdk.MissingSVTypeInfoField
- de.charite.compbio.jannovar.htsjdk.MixingSmallAndSVAlleles
- de.charite.compbio.jannovar.htsjdk.MultipleSVAlleles
- java.lang.RuntimeException
- de.charite.compbio.jannovar.UncheckedJannovarException
- de.charite.compbio.jannovar.mendel.filter.VariantContextFilterException
- de.charite.compbio.jannovar.UncheckedJannovarException
- java.lang.Exception
- java.util.TimerTask (implements java.lang.Runnable)
- de.charite.compbio.jannovar.progress.ProgressReporter
- de.charite.compbio.jannovar.htsjdk.VariantContextAnnotator
- de.charite.compbio.jannovar.htsjdk.VariantContextAnnotator.Options
- de.charite.compbio.jannovar.mendel.filter.VariantContextCounter
- de.charite.compbio.jannovar.mendel.bridge.VariantContextMendelianAnnotator
- de.charite.compbio.jannovar.htsjdk.VariantContextWriterConstructionHelper
- de.charite.compbio.jannovar.htsjdk.VariantEffectHeaderExtender
Interface Hierarchy
- java.lang.AutoCloseable
- java.io.Closeable
- de.charite.compbio.jannovar.mendel.filter.VariantContextProcessor
- java.io.Closeable